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Report for CCDS40477.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40477.1 Public Mus musculus 8 Cog4 23 108 98 CCDS HistoryNCBI Gene:102339Re-query CCDS DB by CCDS ID:40477.1Re-query CCDS DB by GeneID:102339See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40477.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034203.16 ENSMUSP00000034203.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034203.16Link to Ensembl Protein Viewer:ENSMUSP00000034203.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000034203Re-query CCDS DB by Protein ID:ENSMUSP00000034203
Original member Current member NCBI NM_133973.2 NP_598734.1 Accepted alive Link to Nucleotide Sequence:NM_133973.2Link to Protein Sequence:NP_598734.1Re-query CCDS DB by Nucleotide ID:NM_133973Re-query CCDS DB by Protein ID:NP_598734Link to BLAST:NP_598734.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598734.1 785 Q8R1U1 785 100% 0 0

Chromosomal Locations for CCDS 40477.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 110847051 110847209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110849868 110849950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110851336 110851450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110852286 110852460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110853670 110853863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110857937 110858042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110858537 110858694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110859886 110859944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110863251 110863384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110865977 110866095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110866561 110866727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110868202 110868367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110874146 110874208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110879006 110879122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110879633 110879725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110880595 110880678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110880875 110880976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110881371 110881499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110881731 110881865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2358 nt):
ATGGCGGAGGTGGAGTCTCCGCTGAAATTGTCAGGAGCTCCTCCGCCACCGGAGGGGGTGGGAGGAGGAC
ACTGCTCCGAAATCTCCACCGAGCTCATTCGCTCTCTGACAGAGCTGCAGGAGCTGGAAGCTGTGTACGA
ACGACTCTGTGGCGAGGAGAAAGCGGTGGAGAAAGAACTGGATGCTCTTTTGGAACAGCAGAACACCATT
GAAAGTAAGATGGTCACTCTCCACAGGATGGGTCCCAGCCTGCAGTTGATTGAGGGAGACGCAAAGCAAC
TGGCTGGAATGATCACCTTTACCTGCAGCCTAGCTGAAAACGTGTCGAGCAAAGTCCGTCAGCTTGACCT
GGCCAAGAACCGCCTCTATCAGGCCATTCAGAGAGCCGATGACATCTTGGACCTGAAGTTCTGCATGGAT
GGAGTTCAGACTGCTTTGAGGAATGAGGATTATGAGCAGGCTGCAGCCCACATTCATCGTTACTTGTGCC
TGGACAAGTCAGTCATTGAGCTCAGCCGACAAGGCAAAGAAGGAAGCATGATTGATGCCAACCTGAAATT
ACTGCAGGAAGCTGAGCAACGTCTTAAGGCCATAGTCGCAGAGAAGTTTGCTATCGCTACCAAAGAAGGT
GATTTGCCCCAGGTGGAGCGATTCTTCAAGATCTTCCCACTGCTGGGTTTACATGAGGATGGCCTGAGCA
AGTTCTCGGAATACCTGTGCAAACAGGTCGCCAGTAAGGCTGAGGAGAATCTGTTGTTGGTGCTGGGCTC
AGACATGAGTGATCGGAGAGCTGCGGTCATCTTTGCGGATACTCTCACACTCCTGTTTGAAGGGATCGCC
CGAATTGTGGAAACTCACCAACCCATCGTGGAGACTTACTATGGACCAGGGCGACTCTTTACCCTGATCA
AATATCTTCAAGTAGAATGTGACACACAGGTGGAGAAGGTCGTAAACAAGTTCATCAAGCAAAGGGACTA
CCACCAGCAGTTTCGGCTCGTCCAGAGTAATTTGATGAGAAATTCTGCAACAGAAAAAATTGAACCAAGG
GAGCTGGACCCTGTCTTGACTGAGGTTACCCTGATGAATGCGCGAAGTGAACTGTACTTACGCTTCCTCA
GGAAGAGGATCAGCGCGGATTTTGAGGTGGGGGACTCCATGGCTTCAGAAGAAGTAAAGCAAGAGCACCA
GAAGTGCCTGGACAAACTCCTCAATAACTGCCTATTGAGCTGTACCATGCAGGAGCTAATTGGCTTCTAT
ATTACCATGGAGGAGTACTTCATGAGAGAGACGGTCAATAAGGCTGTGGCTCTGGATACCTATGAGAAAG
GCCAGTTGACATCCAGCATGGTGGATGATGTCTTCTACATTGTCAAAAAGTGCATTGGGCGGGCTCTGTC
CAGCTCTAACATCGACTGTCTCTGTGCCATGATCAACCTTGCCACCAGAGAGCTGGAAGCTGACTTCAGG
GATGTTCTATGTAATAAGCTAAGAATGGGCTTCCCAGCCACCACCTTACAGGACATCCAGCGTGGGGTGA
CAAGTGCCGTGAACATCATGCACAGCAGCCTCCAGCAGGGCAAGTTTGACACCAAAGGCATCGAGAGCAC
TGATGAAGCCAAGCTGTCCTTCCTGGTGACTCTGAACAATGTGGAAGTCTGCAGTGAAAACATCTCAACT
CTGAAGAAGACTCTGGAGAGTGACTGCACCAAGCTCTTCAGTCAGGGCATTGGAGGGGAACAGGCCCAGG
CCAAGTTTGACAGCTGCCTTTCTGACTTAGCTGCTGTGTCCAACAAATTTCGAGACCTCTTGCAGGAAGG
GTTGGCGGAGCTCAACAGTTCAGCAGTCAAGCCGCAGGTGCAACCTTGGATCAACACTTTTCTCTCAGTC
TCGCACAGCATCGAGGAGGAAGAATTCAACGACTATGAGGCCAATGACCCCTGGGTACAGCAATTCATCC
TCAACCTGGAACAGCAGATGGCAGAGTTCAAGGCCAGCCTGTCCCCAGTCATCTATGACAGCCTAACCGG
CCTCATGACCAGCCTTGTTGCTGTTGAACTGGAAAAAGTGGTCCTGAAATCCACCTTCAACAGGCTGGGC
GGTCTGCAGTTTGACAAGGAACTCCGGTCACTCATTGCTTACCTTACCACTGTGACAACCTGGACCATCC
GAGACAAGTTCGCCCGCCTCTCTCAGATGGCTACAATCCTTAACCTAGAGCGGGTGACTGAGATACTAGA
TTACTGGGGTGCTAACTCTGGCCCTTTGACATGGCGCCTCACCCCTGCTGAAGTGCGACAGGTGCTGGCT
CTGCGCATAGACTTCCGCAATGAGGATATCAAGAGGCTGCGCCTATAG

Translation (785 aa):
MAEVESPLKLSGAPPPPEGVGGGHCSEISTELIRSLTELQELEAVYERLCGEEKAVEKELDALLEQQNTI
ESKMVTLHRMGPSLQLIEGDAKQLAGMITFTCSLAENVSSKVRQLDLAKNRLYQAIQRADDILDLKFCMD
GVQTALRNEDYEQAAAHIHRYLCLDKSVIELSRQGKEGSMIDANLKLLQEAEQRLKAIVAEKFAIATKEG
DLPQVERFFKIFPLLGLHEDGLSKFSEYLCKQVASKAEENLLLVLGSDMSDRRAAVIFADTLTLLFEGIA
RIVETHQPIVETYYGPGRLFTLIKYLQVECDTQVEKVVNKFIKQRDYHQQFRLVQSNLMRNSATEKIEPR
ELDPVLTEVTLMNARSELYLRFLRKRISADFEVGDSMASEEVKQEHQKCLDKLLNNCLLSCTMQELIGFY
ITMEEYFMRETVNKAVALDTYEKGQLTSSMVDDVFYIVKKCIGRALSSSNIDCLCAMINLATRELEADFR
DVLCNKLRMGFPATTLQDIQRGVTSAVNIMHSSLQQGKFDTKGIESTDEAKLSFLVTLNNVEVCSENIST
LKKTLESDCTKLFSQGIGGEQAQAKFDSCLSDLAAVSNKFRDLLQEGLAELNSSAVKPQVQPWINTFLSV
SHSIEEEEFNDYEANDPWVQQFILNLEQQMAEFKASLSPVIYDSLTGLMTSLVAVELEKVVLKSTFNRLG
GLQFDKELRSLIAYLTTVTTWTIRDKFARLSQMATILNLERVTEILDYWGANSGPLTWRLTPAEVRQVLA
LRIDFRNEDIKRLRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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