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Report for CCDS79151.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79151.1 Public Mus musculus 12 Serpina16 23 108 98 CCDS HistoryNCBI Gene:194604Re-query CCDS DB by CCDS ID:79151.1See the combined annotation on chromosome 12 in Sequence Viewer

Public Note for CCDS 79151.1
This gene lacks full-length transcript support. Therefore this CCDS representation has an inferred exon combination based on RNA-seq and orthologous transcript alignments.

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 79151.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095451.1 ENSMUSP00000093103.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095451.1Link to Ensembl Protein Viewer:ENSMUSP00000093103.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000095451Re-query CCDS DB by Protein ID:ENSMUSP00000093103
Original member Current member EBI ENSMUST00000164148.7 ENSMUSP00000126933.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164148.7Link to Ensembl Protein Viewer:ENSMUSP00000126933.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164148Re-query CCDS DB by Protein ID:ENSMUSP00000126933
Original member Current member NCBI NM_001310472.1 NP_001297401.1 Accepted alive Link to Nucleotide Sequence:NM_001310472.1Link to Protein Sequence:NP_001297401.1Re-query CCDS DB by Nucleotide ID:NM_001310472Re-query CCDS DB by Protein ID:NP_001297401Link to BLAST:NP_001297401.1

Chromosomal Locations for CCDS 79151.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 103668897 103669109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103670271 103670421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103672434 103672704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 103674843 103675464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1257 nt):
ATGGCAGTCTCCATCCTGTCCCTCTGGTTGCTCCTGGCTGTGCTAGTTCCCTGTTTCGGTGGCCCAGTGA
CACCGCCCACAGAGACTTCAAACACGTCACGAACACCAGCAATCCAAGGGGCACCCCCATTCTTCAACAA
CCAAAAATTTGCCTTGAGCCTGTACACACAGCTACCAAAGTCCAAACTAGGCAAGAACGTCATCTTCTCT
CCACTCAGTATCACCATGCCTCTCGTGCTGCTGGCCTTCCAGGATAAGCCGGAAGCCCGACGGCAAGTTC
TGCAGGGTCTAGGGTTCGGAGTCACAGGAGCCTTGGATGCTAAGGCCGCCGTGCAGTATGGGAAGCTGCT
GAGTGCTCTGCTGCCTGCTGAGCACTGTGGGATCCACACTGGAAGTTTGTTCTTTATAGACAAGACCCTA
AAGCCACAAACGACGTTTCTCACACTAGCCAACAGCTCCTACAGCAGCGACGTCATCCTCATCTCTTTTG
GGAACCATAAGTTGGCCAAAAAGCAGATAGACTTGGCCATTAAGGTCAAGACTCAAGGCAAAGTTACAAG
GCTGCTGAGAAATTTGAAGCCACCAACTCATTTGTTTCTGACCAATTATAATCTCTTTAAAGGAAAATGG
AAATATCGCTTTAACCCGAAGTACACAGGGATGAGGAACTTCTCCTTAAGCAATGGGACCAATATCCTGG
TACCAATGATGCAGAAGATAGGCTGGTTCCAGCTGAAGTATTTCTCCCACATACACAGCTATGTCCTCCA
GCTGCCATTCACCTGCAACATCTCGGGTGTCTTCTTTCTTCCCAATGATGGAGATCTTAAGGAATGTGAG
AAGGCACTGTTGGAGCAGAGTTTTAACACGTGGATTCAGCCCTTTCCACTGAGAAAGCGGTGGCTGTTTT
TCCCCAAATTCTCCATACCCGTTGCTCTTCAGCTGGAAAGTTTCAAGCATGTTAACAGTAGCCTTAAACT
GTTCAACAAACGCATGGACCTCTCAGGAATCACTCTGCAAAAGGCACCCTTGAGGGTCACCATGGCAGTG
CACAGGGCGGAGCTGGCTGTGAGTGAGGATGGAGAGGGAGAGGATGTCTCCAACAGCCGTGTCAACCCCG
AGCCAGGCCTTGCTGCCCTCCACTTCAATAGATCCTTCCTACTACTAATCCTGGATGAGGCCAGCAAGAG
CCTTCTCTTCATGGGGAGAGTGCTGAATCCCACTAGAGTCATCACGGATGCTGTACATCGTCCCTGA

Translation (418 aa):
MAVSILSLWLLLAVLVPCFGGPVTPPTETSNTSRTPAIQGAPPFFNNQKFALSLYTQLPKSKLGKNVIFS
PLSITMPLVLLAFQDKPEARRQVLQGLGFGVTGALDAKAAVQYGKLLSALLPAEHCGIHTGSLFFIDKTL
KPQTTFLTLANSSYSSDVILISFGNHKLAKKQIDLAIKVKTQGKVTRLLRNLKPPTHLFLTNYNLFKGKW
KYRFNPKYTGMRNFSLSNGTNILVPMMQKIGWFQLKYFSHIHSYVLQLPFTCNISGVFFLPNDGDLKECE
KALLEQSFNTWIQPFPLRKRWLFFPKFSIPVALQLESFKHVNSSLKLFNKRMDLSGITLQKAPLRVTMAV
HRAELAVSEDGEGEDVSNSRVNPEPGLAALHFNRSFLLLILDEASKSLLFMGRVLNPTRVITDAVHRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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