NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS39775.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39775.1 Public Mus musculus 7 Obox7 23 108 98 CCDS HistoryNCBI Gene:194588Re-query CCDS DB by CCDS ID:39775.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 39775.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069740.13 ENSMUSP00000069239.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069740.13Link to Ensembl Protein Viewer:ENSMUSP00000069239.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000069740Re-query CCDS DB by Protein ID:ENSMUSP00000069239
Original member Current member EBI ENSMUST00000183788.7 ENSMUSP00000138932.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000183788.7Link to Ensembl Protein Viewer:ENSMUSP00000138932.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000183788Re-query CCDS DB by Protein ID:ENSMUSP00000138932
Original member Current member NCBI NM_001038676.1 NP_001033765.1 Accepted alive Link to Nucleotide Sequence:NM_001038676.1Link to Protein Sequence:NP_001033765.1Re-query CCDS DB by Nucleotide ID:NM_001038676Re-query CCDS DB by Protein ID:NP_001033765Link to BLAST:NP_001033765.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001033765.1 218 Q4KL20 218 100% 0 0

Chromosomal Locations for CCDS 39775.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 14664037 14664253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 14664380 14664579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 14665268 14665507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (657 nt):
ATGGCTGAAGGTCCCTCCTTGCATCCAAAACTTCAAGTGGCTTCGAATATACCCATAGAAATCAGTTCCC
AAATACCTCAAGAACTGGCAAAGAACTTACCTTTTCAAATGAGTCAGAGTCCCCTAGTGACCCCAGGAAG
TACAATGCAATCAAGTCTTTCAGTCCCTGAAAGGAACCTACTTCAGCAAGAGTCTGAAGGACCATCAAGA
CAATCAGGTTGTATGCCACTGTCAGATAAATATGTAAACAAACAAACTGGCCTTTTGGCTTCAAGAAATT
TTCGAAAAGAACGCATTGTGTACTCCAAAGAACAGCAGCGCCTGCTGCAAAAACATTTTGATGAGTGCCA
GTACCCAAAGGAGAAGAAAATTGTGGAGCTGGCTGTATTGATTGGTGTTACAAAGATGGAGATCAAGAAA
TGGTTCAAGAACAACCGAGCTAAGTACAGGCAGATGAACCTCCAGAATATTAAACAAGCACTGCCAGAGT
CAAATGGAAGCTCTAAAGCGGTTTCTGAGTCAACCCATTTTCCTGGTTCCATACCTGTTGTTGCCTCTGA
CAATGGAGAGTCCATCTGTTCAGGCACATTTGGTGAGGATTCCATTCCCAAATTCAACTGCAGCCAGGAA
TCTTCCCTGTATTGTTTTCAGGCCTGA

Translation (218 aa):
MAEGPSLHPKLQVASNIPIEISSQIPQELAKNLPFQMSQSPLVTPGSTMQSSLSVPERNLLQQESEGPSR
QSGCMPLSDKYVNKQTGLLASRNFRKERIVYSKEQQRLLQKHFDECQYPKEKKIVELAVLIGVTKMEIKK
WFKNNRAKYRQMNLQNIKQALPESNGSSKAVSESTHFPGSIPVVASDNGESICSGTFGEDSIPKFNCSQE
SSLYCFQA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH