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Report for CCDS49492.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49492.1 Public Mus musculus 14 Acin1 23 108 98 CCDS HistoryNCBI Gene:56215Re-query CCDS DB by CCDS ID:49492.1Re-query CCDS DB by GeneID:56215See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49492.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000148754.9 ENSMUSP00000122003.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000148754.9Link to Ensembl Protein Viewer:ENSMUSP00000122003.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000148754Re-query CCDS DB by Protein ID:ENSMUSP00000122003
Original member Current member EBI ENSMUST00000167015.7 ENSMUSP00000125776.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167015.7Link to Ensembl Protein Viewer:ENSMUSP00000125776.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167015Re-query CCDS DB by Protein ID:ENSMUSP00000125776
Original member Current member NCBI NM_001085472.2 NP_001078941.2 Accepted alive Link to Nucleotide Sequence:NM_001085472.2Link to Protein Sequence:NP_001078941.2Re-query CCDS DB by Nucleotide ID:NM_001085472Re-query CCDS DB by Protein ID:NP_001078941Link to BLAST:NP_001078941.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001078941.2 581 Q9JIX8-2 581 100% 0 0

Chromosomal Locations for CCDS 49492.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 54642728 54643048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54643724 54643824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54643941 54644265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54644448 54644555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54644684 54644791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54645211 54645356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54645605 54645743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54646451 54646603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54646703 54646836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54648088 54648130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54651717 54651858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54653214 54653239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1746 nt):
ATGATGTTCTCAGACAGCAGAGCAGGTGAAGAGAAGGAGGAAGTGACCATGGACACCAGTGAAAACAGAC
CTGAAAATGAGGTGCCTGAGCCTCCTCTGCCTGTTGCAGACCAAGTCAGCAATGATGAGCGCCCAGAGGG
TGGTGCTGAAGAAGAGGAAAAGAAAGAGAGTTCGATGCCCAAGTCATTCAAGAGGAAAATCTCCGTTGTC
TCAGCTACCAAGGGGGTGCAAGCTGGAAACAGTGACACAGAGGGGGGCCAGCCTGGCCGAAAACGCCGTT
GGGGAGCCAGCACTGCCGCGACACAGAAGAAACCGTCCATCAGTATCACCACTGAGTCACTCAAGAGCCT
CATCCCCGACATCAAACCCCTGGCGGGGCAGGAGGCTGTTGTGGATCTTCATGCCGATGACTCCCGAATC
TCTGAGGATGAGACAGAGCGTAATGGCGACGATGGGACCCATGACAAGGGACTGAAGATATGCCGGACAG
TCACTCAGGTAGTACCCGCAGAGGGCCAGGAGAATGGGCAGAGGGAAGAGGAAGAAGAGAAAGAGCCTGA
AGCCGAGCTGCCGGCGCCACCCCAGGTGTCAGTGGAGGTTGCCTTGCCCCCACCTGTGGAGCACGAAGTA
AAGAAAGTAACATTAGGAGATACCTTAACCCGGAGGTCCATCAGCCAACAGAAGTCTGGAGTTTCCATTA
CAATTGATGACCCAGTCCGGACCGCCCAGGTGCCCTCCCCACCCAGGGGCAAGATCAGTAACATTGTCCA
CATCTCCAACCTGGTTCGTCCCTTCACTTTAGGCCAGCTGAAGGAATTATTGGGGCGTACAGGAACTTTG
GTGGAAGAGGCCTTCTGGATAGACAAGATCAAATCTCATTGCTTTGTGACGTACTCTACAGTAGAGGAAG
CCGTTGCCACCCGCACAGCTCTGCACGGGGTCAAGTGGCCCCAGTCCAACCCCAAATTCCTTTGTGCTGA
CTATGCTGAGCAAGATGAGCTGGACTATCACCGGGGACTCTTGGTAGATCGGCCATCTGAAACTAAGGCA
GAGGAACAGGGAGCACCAAGGCCCCTGCATCCCCCACCCCCACCCCCAGTCCAGCCACCGCCCCACCCCC
GGGCTGAGCAGCGGGAGCAGGAAAGGGCTGTTCGAGAGCAATGGGCAGAACGGGAACGGGAAATGGAGCG
CCGGGAGAGGACTCGGTCTGAGAGAGAATGGGATCGGGACAAAGTTCGAGAGGGACCCCGCTCCCGATCA
CGGTCCCGTGACCGCCGCCGGAAAGAGCGAGCAAAATCTAAAGAAAAGAAGAGTGAAAAGAAAGAAAAAG
CCCAGGAGGAGCCACCTGCCAAGCTGCTGGATGACCTCTTCCGTAAGACTAAGGCAGCTCCCTGCATCTA
TTGGCTCCCTCTGACTGAGAGCCAAATTGTTCAGAAGGAGGCAGAGCAAGCTGAACGGGCCAAGGAGCGG
GAGAAGCGGCGAAAAGAACGAGAAGAAGAAGAACAAAAGGAACGGGAGAAGGAAGCTGAGCGGGAACGGA
ACCGGCAGCTAGAACGGGAGAAGAGGAGGGAGCACAGCAGGGAGAGAGAGAGGGACAGGGAGAGAGAGCG
GGACAGGGGTGACCGAGAGCGGGAGAGGGAGCGAGACCGAGACCGAGGCAGGGAGAGGGATCGCAGAGAC
ACCAAGCGCCACAGCAGAAGCCGGAGTCGAAGCACACCTGTACGGGACCGGGGTGGGCGCCGCTAG

Translation (581 aa):
MMFSDSRAGEEKEEVTMDTSENRPENEVPEPPLPVADQVSNDERPEGGAEEEEKKESSMPKSFKRKISVV
SATKGVQAGNSDTEGGQPGRKRRWGASTAATQKKPSISITTESLKSLIPDIKPLAGQEAVVDLHADDSRI
SEDETERNGDDGTHDKGLKICRTVTQVVPAEGQENGQREEEEEKEPEAELPAPPQVSVEVALPPPVEHEV
KKVTLGDTLTRRSISQQKSGVSITIDDPVRTAQVPSPPRGKISNIVHISNLVRPFTLGQLKELLGRTGTL
VEEAFWIDKIKSHCFVTYSTVEEAVATRTALHGVKWPQSNPKFLCADYAEQDELDYHRGLLVDRPSETKA
EEQGAPRPLHPPPPPPVQPPPHPRAEQREQERAVREQWAEREREMERRERTRSEREWDRDKVREGPRSRS
RSRDRRRKERAKSKEKKSEKKEKAQEEPPAKLLDDLFRKTKAAPCIYWLPLTESQIVQKEAEQAERAKER
EKRRKEREEEEQKEREKEAERERNRQLEREKRREHSRERERDRERERDRGDRERERERDRDRGRERDRRD
TKRHSRSRSRSTPVRDRGGRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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