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Report for CCDS46090.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46090.1 Public Homo sapiens 19 PSG8 24 110 108 CCDS HistoryNCBI Gene:440533Re-query CCDS DB by CCDS ID:46090.1Re-query CCDS DB by GeneID:440533See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46090.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000406636.7 ENSP00000385081.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000406636.7Link to Ensembl Protein Viewer:ENSP00000385081.3Re-query CCDS DB by Nucleotide ID:ENST00000406636Re-query CCDS DB by Protein ID:ENSP00000385081
Original member Current member NCBI NM_001130168.2 NP_001123640.1 Accepted alive Link to Nucleotide Sequence:NM_001130168.2Link to Protein Sequence:NP_001123640.1Re-query CCDS DB by Nucleotide ID:NM_001130168Re-query CCDS DB by Protein ID:NP_001123640Link to BLAST:NP_001123640.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123640.1 297 Q9UQ74-2 297 100% 0 0

Chromosomal Locations for CCDS 46090.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 42753360 42753376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42754333 42754587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42754988 42755266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42758002 42758280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42765518 42765581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (894 nt):
ATGGGGCTCCTCTCAGCCCCTCCCTGCACACAGCGCATCACCTGGAAGGGGCTCCTGCTCACAGTGGAGA
CTCCCAAGCCCTCCATCTCCAGCAGCAAATTAAACCCCAGGGAGGCCATGGAGGCTGTGAGCTTAACCTG
TGATCCTGAGACTCCGGACGCAAGCTACCTGTGGTGGATGAATGGTCAGAGCCTCCCTATGTCTCACAGG
TTGCAGTTGTCTGAAACCAACAGGACCCTCTTTCTATTGGGTGTCACAAAGTACACTGCAGGACCCTATG
AATGTGAAATACGGAACCCAGTGAGTGCCAGCCGCAGTGACCCATTCACCCTGAATCTCCTCCCGAAGCT
GCCCAAGCCCTACATCACCATCAACAACTTAAAACCCAGGGAGAATAAGGATGTCTTAAACTTCACCTGT
GAACCTAAGAGTGAGAACTACACCTACATTTGGTGGCTAAATGGTCAGAGCCTCCCGGTCAGTCCCAGGG
TAAAGCGACCCATTGAAAACAGGATCCTCATTCTACCCAGTGTCACGAGAAATGAAACAGGACCCTATCA
ATGTGAAATAAGGGACCAATATGGTGGCATCCGCAGTTACCCAGTCACCCTGAATGTCCTCTATGGTCCA
GACCTCCCCAGAATTTACCCTTCATTCACCTATTACCGTTCAGGAGAAGTCCTCTACTTGTCCTGTTCTG
CGGACTCTAACCCACCGGCACAGTATTCTTGGACAATTAATGGGAAGTTTCAGCTATCAGGACAAAAGCT
CTTTATCCCCCAAATTACTACAAAGCATAGCGGGCTCTATGCTTGCTCTGTTCGTAACTCAGCCACTGGC
AAGGAAAGCTCCAAATCCATGACAGTAAAAGTCTCTGACTGGACATTACCCTGA

Translation (297 aa):
MGLLSAPPCTQRITWKGLLLTVETPKPSISSSKLNPREAMEAVSLTCDPETPDASYLWWMNGQSLPMSHR
LQLSETNRTLFLLGVTKYTAGPYECEIRNPVSASRSDPFTLNLLPKLPKPYITINNLKPRENKDVLNFTC
EPKSENYTYIWWLNGQSLPVSPRVKRPIENRILILPSVTRNETGPYQCEIRDQYGGIRSYPVTLNVLYGP
DLPRIYPSFTYYRSGEVLYLSCSADSNPPAQYSWTINGKFQLSGQKLFIPQITTKHSGLYACSVRNSATG
KESSKSMTVKVSDWTLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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