NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS27401.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27401.2 Public Mus musculus 15 Marchf11 23 108 98 CCDS HistoryNCBI Gene:211147Re-query CCDS DB by CCDS ID:27401.2Re-query CCDS DB by GeneID:211147See the combined annotation on chromosome 15 in Sequence Viewer

Public Note for CCDS 27401.1
The coding region has been updated to represent an alternative splice pattern that is more supported by the available transcript and homology data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 27401.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000140840.7 ENSMUSP00000118729.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000140840.7Link to Ensembl Protein Viewer:ENSMUSP00000118729.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000140840Re-query CCDS DB by Protein ID:ENSMUSP00000118729
Original member Current member NCBI NM_177597.6 NP_808265.2 Accepted alive Link to Nucleotide Sequence:NM_177597.6Link to Protein Sequence:NP_808265.2Re-query CCDS DB by Nucleotide ID:NM_177597Re-query CCDS DB by Protein ID:NP_808265Link to BLAST:NP_808265.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808265.2 400 Q8CBH7-1 400 100% 0 0

Chromosomal Locations for CCDS 27401.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 26309262 26309792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 26310971 26311126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 26387748 26387940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 26409097 26409419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1203 nt):
ATGAGCGACGAGGGCAAAAAACGGTCTAGCCGGGCGGACAGCCTCGAAGCTGAGCCACCTCTGCCCCCGC
CGCCCCCACCCCCGCCTCCGGGAGAGTCGGTCCTGGTCCCCACCTCCCCACGCTACCGGCCGCCGCTGCC
CGCGCCTCTGGAGCGCATCGTAGGGTCGGGCGAGCCGCCGGTAGAACTGGCCCCTCGGCGCAAGGGCGCA
GGAGAGCCTCTACCGCCGCTGCCGCCGTCTCTGTTGCCCGGCGACCAGGAGGTGACAGCGGCGGGCGACT
CCTGCGAAGGTCCTAGGCGCCTTCCAGAGGTGAAGCTCCCCGAGGCTGCGACGGGGAAAGGCAGCCCGGG
GGAGCCCGAGGCCGGCGCGTGCCGGGAGGGCGAGCGGCGAGGCACCGGAGACCAGCCCGAAACACGCTCC
GTATGTAGCAGCCGCAGCAGCAGTAGTGGCGGCGGTAGCGACCAGCGCTCGGGGCACCAGCACCAGCACC
ATCAGCCCATTTGCAAGATCTGCTTCCAGGGCGCAGAGCAGGGTGAGTTGTTAAATCCTTGCCGATGTGA
TGGGTCTGTTCGATACACACATCAGCTGTGTCTTCTAAAGTGGATCAGTGAGAGAGGCTCCTGGACCTGC
GAGCTGTGCTGTTATAGATACCACGTCACAGCCATTAAAATGAAGCAACCTTGCCAGTGGCAGAGCATTT
CTATAACACTGGTTGAGAAAGTTCAGATGATCGCTGTAATCCTAGGATCCCTGTTCTTAATAGCGAGTGT
GACTTGGCTCCTCTGGTCAGCCTTCAGCCCCTATGCAGTGTGGCAGAGGAAGGACATCCTTTTTCAAATC
TGCTATGGAATGTATGGTTTTATGGATCTAGTGTGCATAGGCCTCATTGTGCATGAAGGAGCTGCCGTTT
ACAGAGTGTTTAAGCGATGGCGAGCTGTTAATTTGCACTGGGATGTGTTAAATTATGACAAAGCCACAGA
CATTGAAGAAAGCAGCCGAGGAGAGTCTTCCACAAGTAGGACTTTGTGGCTACCATTGTCAGCTCTGAGG
AACAGGAACTTGGTCCACCCAACGCAACTAACCTCACCACGGTTTCAGTGTGGCTATGTGCTATTACATC
TATTCAATCGGATGAGGGCCCATGAAGATGTATCGGAAGATAACGGCTCTGGGGAGGTAGTGATGAGAGT
GACGTCTGTGTGA

Translation (400 aa):
MSDEGKKRSSRADSLEAEPPLPPPPPPPPPGESVLVPTSPRYRPPLPAPLERIVGSGEPPVELAPRRKGA
GEPLPPLPPSLLPGDQEVTAAGDSCEGPRRLPEVKLPEAATGKGSPGEPEAGACREGERRGTGDQPETRS
VCSSRSSSSGGGSDQRSGHQHQHHQPICKICFQGAEQGELLNPCRCDGSVRYTHQLCLLKWISERGSWTC
ELCCYRYHVTAIKMKQPCQWQSISITLVEKVQMIAVILGSLFLIASVTWLLWSAFSPYAVWQRKDILFQI
CYGMYGFMDLVCIGLIVHEGAAVYRVFKRWRAVNLHWDVLNYDKATDIEESSRGESSTSRTLWLPLSALR
NRNLVHPTQLTSPRFQCGYVLLHLFNRMRAHEDVSEDNGSGEVVMRVTSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH