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Report for CCDS49123.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49123.1 Public Mus musculus 12 Oog1 23 108 98 CCDS HistoryNCBI Gene:193322Re-query CCDS DB by CCDS ID:49123.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49123.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095509.5 ENSMUSP00000093165.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095509.5Link to Ensembl Protein Viewer:ENSMUSP00000093165.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000095509Re-query CCDS DB by Protein ID:ENSMUSP00000093165
Original member Current member NCBI NM_178657.5 NP_848772.3 Accepted alive Link to Nucleotide Sequence:NM_178657.5Link to Protein Sequence:NP_848772.3Re-query CCDS DB by Nucleotide ID:NM_178657Re-query CCDS DB by Protein ID:NP_848772Link to BLAST:NP_848772.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848772.3 496 E9Q5G7 496 100% 0 0

Chromosomal Locations for CCDS 49123.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 87602738 87602767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87605966 87606276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87606791 87607366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 87608001 87608574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1491 nt):
ATGGTGATCTGTCTCCATTGTCCAGATCAGGATGATTCTTTAGAAGAAGTCACAGAGGAATGCTATTCCC
CACCCACCCTCCAGAACCTGGCAATTCAGAGTCTACTGAGGGATGAGGCCTTGGCCATTTCTGCTCTCAC
GGACCTGCCCCAGAGTCTGTTCCCAGTAATTTTTGAGGAGGCCTTCACTGATGGATATATAGGGATCTTG
AAGGCCATGATACCTGTGTGGCCCTTCCCATACCTTTCTTTAGGAAAGCAGATAAATAATTGCAACCTGG
AGACTTTGAAGGCTATGCTTGAGGGACTAGATATACTGCTTGCACAAAAGGTTCAAACCAGTAGGTGCAA
ACTCAGAGTAATTAATTGGAGAGAAGATGACTTGAAGATATGGGCTGGATCCCATGAAGGTGAAGGCTTA
CCAGATTTCAGGACAGAGAAGCAGCCAATTGAGAACAGTGCTGGCTGTGAGGTGAAGAAAGAATTGAAGG
TGACGACTGAAGTCCTTCGCATGAAGGGCAGACTTGATGAATCTACCACATACTTGTTGCAGTGGGCCCA
GCAGAGAAAAGATTCTATTCATCTATTCTGTAGAAAGCTACTAATTGAAGGCTTAACCAAAGCCTCAGTG
ATAGAAATCTTCAAAACTGTACACGCAGACTGTATACAGGAGCTTATCCTAAGATGTATCTGCATAGAAG
AGTTGGCTTTTCTTAATCCCTACCTGAAACTGATGAAAAGTCTTTTCACACTCACACTAGATCACATCAT
AGGTACCTTCAGTTTGGGTGATTCTGAAAAGCTTGATGAGGAGACAATATTCAGCTTGATTTCTCAACTT
CCCACACTCCACTGTCTCCAGAAACTCTATGTAAATGATGTCCCTTTTATAAAAGGCAACCTGAAAGAAT
ACCTCAGGTGCCTGAAAAAGCCCTTGGAGACACTTTGCATCAGTAACTGTGACCTCTCACAGTCAGACTT
GGATTGCCTGCCCTATTGCCTGAATATTTGTGAACTCAAACATCTGCATATTAGTGATATATATTTATGT
GATTTACTCCTTGAGCCTCTTGGTTTTCTCCTTGAGAGAGTTGGAGATACCCTGAAAACCCTGGAATTGG
ATTCATGTTGTATAGTGGACTTTCAGTTCAGTGCCTTGCTGCCTGCCCTAAGCCAATGTTCTCACCTCAG
AGAGGTCACTTTCTATGATAATGATGTTTCTCTGCCTTTCTTGAAACAACTTCTACACCACACAGCCCTG
CTGAGTCAGCTGATCTATGAGTGTTACCCTGCCCCTCTAGAGTGCTATGATGACAGTGGTGTAATACTAA
CACACAGATTAGAAAGTTTTTGTCCTGAGCTTCTGGATATACTGAGAGCCAAAAGACAGCTCCATAGTGT
CTCCTTTCAAACAACCAAATGCTCTAAATGTGGTGGGTGCTACATTTATGATCGGCATACCCAATGTTGC
CGTTTTGTGGAACTACTATAA

Translation (496 aa):
MVICLHCPDQDDSLEEVTEECYSPPTLQNLAIQSLLRDEALAISALTDLPQSLFPVIFEEAFTDGYIGIL
KAMIPVWPFPYLSLGKQINNCNLETLKAMLEGLDILLAQKVQTSRCKLRVINWREDDLKIWAGSHEGEGL
PDFRTEKQPIENSAGCEVKKELKVTTEVLRMKGRLDESTTYLLQWAQQRKDSIHLFCRKLLIEGLTKASV
IEIFKTVHADCIQELILRCICIEELAFLNPYLKLMKSLFTLTLDHIIGTFSLGDSEKLDEETIFSLISQL
PTLHCLQKLYVNDVPFIKGNLKEYLRCLKKPLETLCISNCDLSQSDLDCLPYCLNICELKHLHISDIYLC
DLLLEPLGFLLERVGDTLKTLELDSCCIVDFQFSALLPALSQCSHLREVTFYDNDVSLPFLKQLLHHTAL
LSQLIYECYPAPLECYDDSGVILTHRLESFCPELLDILRAKRQLHSVSFQTTKCSKCGGCYIYDRHTQCC
RFVELL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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