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Report for CCDS24420.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24420.1 Public Mus musculus 11 Purb 23 108 98 CCDS HistoryNCBI Gene:19291Re-query CCDS DB by CCDS ID:24420.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24420.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000179343.2 ENSMUSP00000136957.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179343.2Link to Ensembl Protein Viewer:ENSMUSP00000136957.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179343Re-query CCDS DB by Protein ID:ENSMUSP00000136957
Original member Current member NCBI NM_011221.3 NP_035351.1 Accepted alive Link to Nucleotide Sequence:NM_011221.3Link to Protein Sequence:NP_035351.1Re-query CCDS DB by Nucleotide ID:NM_011221Re-query CCDS DB by Protein ID:NP_035351Link to BLAST:NP_035351.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035351.1 324 O35295 324 100% 0 0

Chromosomal Locations for CCDS 24420.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 6474912 6475886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (975 nt):
ATGGCGGACGGCGACAGCGGCAGCGAGCGCGGCGGTGGCGGCGGCGGCGGCGGCGGGCCCGGCGGCTTCC
AGCCCGCGCCCCGCGGCGGCGGCGGCGGCGGTGGCGGGCCGGGCGGCGAGCAGGAGACGCAGGAGCTGGC
CTCGAAGCGGCTGGACATCCAGAACAAGCGCTTCTACCTGGACGTGAAGCAGAACGCCAAGGGCCGCTTC
CTCAAGATCGCCGAGGTGGGCGCGGGCGGCTCCAAGAGCCGCCTCACGCTGTCGATGGCGGTGGCCGCCG
AGTTCCGCGACTCGCTGGGCGACTTCATCGAGCACTACGCGCAGCTGGGTCCCAGCAGCCCCGAGCAGCT
GGCGGCGGGCGCCGAGGAGGGCGGCGGGCCGCGCCGCGCGCTCAAGAGCGAGTTCCTGGTGCGCGAGAAC
CGCAAGTACTACCTGGACCTCAAGGAGAACCAGCGCGGCCGCTTCCTGCGCATCCGCCAGACGGTGAACC
GCGGCGGCGGCGGCTTCGGCGGGGGGCCCGGGCCCGGCGGCCTGCAGAGCGGCCAGACCATCGCGCTGCC
CGCGCAGGGCCTCATCGAGTTCCGCGACGCGCTCGCCAAGCTCATCGACGACTACGGGGGCGACGAGGAC
GAGCTGGCCGGCGGCCCGGGAGGCGGCGCCGGCGGCCCCGGGGGCGGCCTGTACGGAGAGCTCCCGGAGG
GCACCTCCATCACCGTGGACTCGAAGCGCTTCTTCTTCGACGTCGGCTGCAACAAGTACGGGGTGTTCCT
GCGAGTGAGCGAGGTGAAGCCGTCCTACCGCAATGCCATCACCGTGCCCTTCAAGGCCTGGGGCAAGTTT
GGAGGCGCCTTCTGTCGGTATGCAGATGAAATGAAAGAGATCCAGGAGCGACAGAGGGATAAGCTTTACG
AGCGACGCGGCGGGGGCAGCGGTGGCGGCGACGAGTCGGAGGGTGAGGAAGTGGATGAGGATTGA

Translation (324 aa):
MADGDSGSERGGGGGGGGGPGGFQPAPRGGGGGGGGPGGEQETQELASKRLDIQNKRFYLDVKQNAKGRF
LKIAEVGAGGSKSRLTLSMAVAAEFRDSLGDFIEHYAQLGPSSPEQLAAGAEEGGGPRRALKSEFLVREN
RKYYLDLKENQRGRFLRIRQTVNRGGGGFGGGPGPGGLQSGQTIALPAQGLIEFRDALAKLIDDYGGDED
ELAGGPGGGAGGPGGGLYGELPEGTSITVDSKRFFFDVGCNKYGVFLRVSEVKPSYRNAITVPFKAWGKF
GGAFCRYADEMKEIQERQRDKLYERRGGGSGGGDESEGEEVDED


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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