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Report for CCDS37884.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37884.1 Public Mus musculus 19 Ptprcap 23 108 98 CCDS HistoryNCBI Gene:19265Re-query CCDS DB by CCDS ID:37884.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37884.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061086.8 ENSMUSP00000053412.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061086.8Link to Ensembl Protein Viewer:ENSMUSP00000053412.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000061086Re-query CCDS DB by Protein ID:ENSMUSP00000053412
Original member Current member NCBI NM_016933.3 NP_058629.2 Accepted alive Link to Nucleotide Sequence:NM_016933.3Link to Protein Sequence:NP_058629.2Re-query CCDS DB by Nucleotide ID:NM_016933Re-query CCDS DB by Protein ID:NP_058629Link to BLAST:NP_058629.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058629.2 197 Q64697 197 100% 0 0

Chromosomal Locations for CCDS 37884.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 4154701 4154703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4155923 4156513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (594 nt):
ATGGCTCTGCCTGGTACCCTCAGATTTGGGGTGCTGATGGCCCTGCCAGGGGCACTGGCCTCTGGGGCAG
ACCCAGAGGACGGTGTGGGCTCCAGTGTGGTCACCATTGTCCTGCTGCTCTTGCTCCTGCTGCTGCTGGT
CACTGCCCTAGCCTTGGCTTGGCGTCGCCTCAGCCATGCCTCAGGGGGGTACTACCACCCAGCTCGCCTG
GGTGCTGCCTTGTGGGGCCACACCTGCCGCCTGCTCTGGGCCAGCCCTGCAGGCCGCTGGCTTCGCGCCC
GCACTGAGCTGGAATCCCCAGAAGAATCAGGGCCGCCGGAGGATGAAGAGGATGCAGAAGATTTTGTGAT
AGATGGTGGCCCCGAGGAAGCTGCCGCCAAGGAAGAGGAGCAGCGGTGTCAAGCAGAGCAGACCCGAGAT
CCACGTGACACAGACAGTGACGGGGGCCTGGGCCTGAGCTCTCAGGGTCCTGTGGGCTCAGGCAGCAGCG
CCGAGGCCCTGCTGAGTGACCTGCATGCCTTTTCTGGTAGTGCTGCCTGGGATGACAGCGCTGGAGGAGC
AGGGGGCCAGGGCCTCCGGGTCACTGCACTATAG

Translation (197 aa):
MALPGTLRFGVLMALPGALASGADPEDGVGSSVVTIVLLLLLLLLLVTALALAWRRLSHASGGYYHPARL
GAALWGHTCRLLWASPAGRWLRARTELESPEESGPPEDEEDAEDFVIDGGPEEAAAKEEEQRCQAEQTRD
PRDTDSDGGLGLSSQGPVGSGSSAEALLSDLHAFSGSAAWDDSAGGAGGQGLRVTAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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