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Report for CCDS18633.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18633.1 Public Mus musculus 4 Rspo1 23 108 98 CCDS HistoryNCBI Gene:192199Re-query CCDS DB by CCDS ID:18633.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18633.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030687.7 ENSMUSP00000030687.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030687.7Link to Ensembl Protein Viewer:ENSMUSP00000030687.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000030687Re-query CCDS DB by Protein ID:ENSMUSP00000030687
Original member Current member NCBI NM_138683.2 NP_619624.2 Accepted alive Link to Nucleotide Sequence:NM_138683.2Link to Protein Sequence:NP_619624.2Re-query CCDS DB by Nucleotide ID:NM_138683Re-query CCDS DB by Protein ID:NP_619624Link to BLAST:NP_619624.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_619624.2 265 Q9Z132 265 99.2453% 0 2

Chromosomal Locations for CCDS 18633.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 124991333 124991426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 125004982 125005173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 125007147 125007296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 125007584 125007772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 125008373 125008545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (798 nt):
ATGCGGCTTGGGCTGTGCGTGGTGGCCCTGGTTCTGAGCTGGACACACATCGCCGTGGGCAGCCGGGGGA
TCAAGGGCAAGAGACAGAGGCGGATCAGTGCTGAGGGGAGCCAAGCCTGCGCCAAGGGCTGTGAGCTCTG
TTCAGAAGTCAACGGTTGCCTCAAGTGCTCGCCCAAGCTCTTCATTCTGCTGGAGAGGAACGACATCCGC
CAGGTGGGCGTCTGCCTGCCGTCCTGCCCACCTGGATACTTTGATGCCCGCAACCCCGACATGAACAAAT
GCATCAAATGCAAGATCGAGCACTGTGAGGCCTGCTTCAGCCACAACTTCTGCACCAAGTGTCAGGAGGG
CTTGTACTTACACAAGGGCCGCTGCTATCCAGCCTGCCCTGAGGGCTCTACAGCCGCTAACAGCACCATG
GAGTGCGGCAGTCCTGCACAATGTGAAATGAGCGAGTGGTCCCCGTGGGGACCCTGCTCCAAGAAGAGGA
AGCTGTGCGGTTTCCGGAAGGGATCGGAAGAGCGGACACGCAGAGTGCTCCATGCTCCCGGGGGAGACCA
CACCACCTGCTCCGACACCAAAGAGACCCGCAAGTGTACCGTGCGCAGGACGCCCTGCCCAGAGGGGCAG
AAGAGGAGGAAGGGGGGCCAGGGCCGGAGGGAGAATGCCAACAGGCATCCGGCCAGGAAGAACAGCAAGG
AGCCGGGCTCCAACTCTCGGAGACACAAAGGGCAACAGCAGCCACAGCCAGGGACAACAGGGCCACTCAC
ATCAGTAGGACCTACCTGGGCACAGTGA

Translation (265 aa):
MRLGLCVVALVLSWTHIAVGSRGIKGKRQRRISAEGSQACAKGCELCSEVNGCLKCSPKLFILLERNDIR
QVGVCLPSCPPGYFDARNPDMNKCIKCKIEHCEACFSHNFCTKCQEGLYLHKGRCYPACPEGSTAANSTM
ECGSPAQCEMSEWSPWGPCSKKRKLCGFRKGSEERTRRVLHAPGGDHTTCSDTKETRKCTVRRTPCPEGQ
KRRKGGQGRRENANRHPARKNSKEPGSNSRRHKGQQQPQPGTTGPLTSVGPTWAQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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