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Report for CCDS19031.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19031.1 Public Mus musculus 4 Nadk 23 108 98 CCDS HistoryNCBI Gene:192185Re-query CCDS DB by CCDS ID:19031.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19031.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030939.13 ENSMUSP00000030939.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030939.13Link to Ensembl Protein Viewer:ENSMUSP00000030939.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000030939Re-query CCDS DB by Protein ID:ENSMUSP00000030939
Original member Current member EBI ENSMUST00000105613.9 ENSMUSP00000101238.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105613.9Link to Ensembl Protein Viewer:ENSMUSP00000101238.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000105613Re-query CCDS DB by Protein ID:ENSMUSP00000101238
Original member Current member NCBI NM_001159637.1 NP_001153109.1 Accepted alive Link to Nucleotide Sequence:NM_001159637.1Link to Protein Sequence:NP_001153109.1Re-query CCDS DB by Nucleotide ID:NM_001159637Re-query CCDS DB by Protein ID:NP_001153109Link to BLAST:NP_001153109.1
Original member Current member NCBI NM_138671.3 NP_619612.2 Accepted alive Link to Nucleotide Sequence:NM_138671.3Link to Protein Sequence:NP_619612.2Re-query CCDS DB by Nucleotide ID:NM_138671Re-query CCDS DB by Protein ID:NP_619612Link to BLAST:NP_619612.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153109.1 439 P58058 439 100% 0 0
NP_619612.2 439 P58058 439 100% 0 0

Chromosomal Locations for CCDS 19031.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 155577019 155577197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155579311 155579394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155584137 155584266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155585152 155585260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155585364 155585449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155586729 155586831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155587357 155587496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155587685 155587784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155587861 155588018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155588610 155588692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155589328 155589475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1320 nt):
ATGGAAATGGAACAAGAAAAGATGAACCTGAGTCAGGAGCTGAGTGCCGACTCAGCCTCCTACAACTGCT
CAGCATGTCATGGGGATGAGACCTGGAGCTACAATCACCCTATCCGGGGCCGGGCCAAGTCTCGGAGCCT
GTCAGCCTCACCTGCCCTAGGCAGCACCAAGGAGTTCAGGAGGACCCGCTCTCTCCATGGACCGTGCCCA
GTGACAACATTTGGACCAAAGGCCTGCGTGCTGCAGAACCCGCAGACCATCATGCACATCCAGGACCCTG
CAAGTCAACGGTTGACATGGAACAAGTCTCCCAAGAGTGTGCTTGTCATCAAAAAGATCCGAGATGCCAG
CTTACTGCAGCCCTTCAAAGAGCTCTGCATATACCTCATGGAGGAAAACAACATGATCGTGTATGTGGAA
AAGAAAGTTCTGGAAGACCCTGCTATAGTGAGTGATGAAAACTTTGGACCAGTGAAGAAGAAGTTCTGCA
CGTTCCGTGAAGACTATGATGACATTTCCAACCAGATAGACTTCATCATATGCCTTGGAGGAGATGGCAC
CTTGCTCTATGCCTCCTCACTTTTCCAGGGCAGTGTGCCTCCTGTCATGGCCTTCCACCTTGGATCCCTG
GGCTTTCTGACCCCCTTCAACTTTGAGAACTTCCAATCCCAAGTGAATCAGGTGATAGAGGGGAATGCCG
CTGTCATCCTGAGGAGCCGGCTGAAGGTCAGGGTGGTGAAAGAGCCCAGAGACAAGAAGACAGCCATCCA
CAACGGCCTCAGTGAAAATGGTCTGGACACAGAGGGCGGAAAACAGGCTATGCAATACCAGGTCTTAAAT
GAAGTGGTGATCGACAGAGGCCCCTCCTCATATCTGTCCAACGTGGATGTCTACCTGGATGGACACCTTA
TCACTACTGTGCAGGGCGATGGAGTGATCGTGTCCACCCCGACGGGCAGCACAGCATATGCAGCTGCAGC
CGGGGCCTCCATGGTCCACCCCAACGTGCCGGCCATCATGGTTACACCCATCTGCCCCCACTCGCTGTCA
TTCCGGCCTATCGTGGTCCCTGCAGGGGTCGAGCTGAAGATTATGCTGTCACCGGAAGCCAGGAACACGG
CATGGGTGTCTTTTGATGGACGGAAGAGACAGGAAATCCGCCATGGAGACAGCATCAGCATTACCACCTC
CTGCTACCCGCTGCCCTCCATCTGTGTGTGCGACCCTGTGAGTGACTGGTTCGAGAGCCTTGCCCAGTGT
CTGCACTGGAATGTTCGAAAGAAGCAAGCTCACTTTCCAGAGGATGAGGAGGACAGCTAG

Translation (439 aa):
MEMEQEKMNLSQELSADSASYNCSACHGDETWSYNHPIRGRAKSRSLSASPALGSTKEFRRTRSLHGPCP
VTTFGPKACVLQNPQTIMHIQDPASQRLTWNKSPKSVLVIKKIRDASLLQPFKELCIYLMEENNMIVYVE
KKVLEDPAIVSDENFGPVKKKFCTFREDYDDISNQIDFIICLGGDGTLLYASSLFQGSVPPVMAFHLGSL
GFLTPFNFENFQSQVNQVIEGNAAVILRSRLKVRVVKEPRDKKTAIHNGLSENGLDTEGGKQAMQYQVLN
EVVIDRGPSSYLSNVDVYLDGHLITTVQGDGVIVSTPTGSTAYAAAAGASMVHPNVPAIMVTPICPHSLS
FRPIVVPAGVELKIMLSPEARNTAWVSFDGRKRQEIRHGDSISITTSCYPLPSICVCDPVSDWFESLAQC
LHWNVRKKQAHFPEDEEDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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