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Report for CCDS93552.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93552.1 Public Homo sapiens 4 CNOT6L 24 110 108 CCDS HistoryNCBI Gene:246175Re-query CCDS DB by CCDS ID:93552.1Re-query CCDS DB by GeneID:246175See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93552.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000512485.6 ENSP00000425571.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000512485.6Link to Ensembl Protein Viewer:ENSP00000425571.2Re-query CCDS DB by Nucleotide ID:ENST00000512485Re-query CCDS DB by Protein ID:ENSP00000425571
Original member Current member EBI ENST00000649644.1 ENSP00000497467.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000649644.1Link to Ensembl Protein Viewer:ENSP00000497467.1Re-query CCDS DB by Nucleotide ID:ENST00000649644Re-query CCDS DB by Protein ID:ENSP00000497467
Original member Current member NCBI NM_001387835.1 NP_001374764.1 Accepted alive Link to Nucleotide Sequence:NM_001387835.1Link to Protein Sequence:NP_001374764.1Re-query CCDS DB by Nucleotide ID:NM_001387835Re-query CCDS DB by Protein ID:NP_001374764Link to BLAST:NP_001374764.1
Original member Current member NCBI NM_001387836.1 NP_001374765.1 Accepted alive Link to Nucleotide Sequence:NM_001387836.1Link to Protein Sequence:NP_001374765.1Re-query CCDS DB by Nucleotide ID:NM_001387836Re-query CCDS DB by Protein ID:NP_001374765Link to BLAST:NP_001374765.1
Original member Current member NCBI NM_001387837.1 NP_001374766.1 Accepted alive Link to Nucleotide Sequence:NM_001387837.1Link to Protein Sequence:NP_001374766.1Re-query CCDS DB by Nucleotide ID:NM_001387837Re-query CCDS DB by Protein ID:NP_001374766Link to BLAST:NP_001374766.1
Original member Current member NCBI NM_001387838.1 NP_001374767.1 Accepted alive Link to Nucleotide Sequence:NM_001387838.1Link to Protein Sequence:NP_001374767.1Re-query CCDS DB by Nucleotide ID:NM_001387838Re-query CCDS DB by Protein ID:NP_001374767Link to BLAST:NP_001374767.1

Chromosomal Locations for CCDS 93552.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 77720431 77720643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 77726167 77726369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 77728854 77729081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 77731387 77731538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 77742141 77742295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 77744718 77744875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 77748316 77748384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 77756862 77756951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 77773081 77773166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 77774530 77774716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 77776271 77776382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1653 nt):
ATGCCAAAGGAAAAATATGATCCTCCAGATCCTCGCAGAATTTATACCATCATGTCAGCAGAGGAGGTAG
CCAATGGGAAAAAATCTCACTGGGCAGAATTAGAAATCTCGGGTAGAGTGCGGAGCCTAAGTACATCACT
TTGGTCATTGACACACTTGACAGCGCTGCACCTAAATGACAATTACCTTAGTCGCATTCCACCTGATATT
GCCAAGCTTCATAATCTGGTTTACCTGGATCTGTCATCCAATAAACTCAGAAGTTTACCAGCAGAACTAG
GAAACATGGTGTCTCTCAGGGAATTGCTTTTAAATAACAATCTGTTACGGGTTTTGCCTTATGAACTTGG
TCGGCTCTTCCAGCTACAAACTCTAGGTTTGAAAGGCAATCCTTTATCACAGGATATTCTCAACTTATAC
CAGGACCCAGATGGAACCCGAAAGCTACTGAACTTCATGCTTGACAATCTCGCAGTTCATCCAGAGCAGC
TTCCTCCGAGGCCATGGATTACATTAAAAGAACGAGACCAAATTCTGCCGTCAGCATCATTCACGGTTAT
GTGTTACAATGTGTTATGTGATAAATACGCTACCCGGCAGCTATATGGCTATTGCCCATCCTGGGCATTA
AACTGGGAATACAGGAAAAAGGGAATTATGGAAGAAATTGTTAACTGTGACGCAGATATCATTAGTCTTC
AGGAAGTGGAAACAGAGCAATACTTCACTCTCTTTCTGCCAGCATTGAAGGAGCGTGGATATGATGGATT
TTTTTCTCCAAAGTCACGTGCCAAAATCATGTCTGAGCAGGAGAGAAAGCATGTAGATGGTTGTGCAATA
TTCTTCAAAACAGAAAAATTTACATTGGTGCAGAAGCATACAGTGGAATTTAACCAAGTGGCGATGGCTA
ATTCAGATGGATCCGAAGCTATGCTGAACAGAGTGATGACAAAAGATAACATTGGTGTCGCTGTGGTATT
AGAGGTCCACAAAGAACTATTTGGAGCAGGTATGAAGCCTATTCATGCTGCAGACAAACAGCTGCTTATA
GTGGCAAATGCCCACATGCATTGGGACCCAGAGTATTCTGATGTGAAGCTCATCCAGACCATGATGTTTG
TCTCAGAGGTTAAAAACATTCTGGAGAAAGCCTCTAGTAGGCCTGGAAGCCCAACTGCAGATCCTAATTC
CATCCCGCTGGTGCTATGTGCAGATCTTAACTCATTGCCAGATTCAGGTGTTGTGGAATACTTAAGCAAT
GGAGGAGTAGCTGACAACCATAAAGACTTCAAGGAACTAAGGTACAATGAGTGTCTTATGAACTTCAGCT
GCAATGGAAAGAATGGAAGCTCAGAAGGGAGAATCACACATGGCTTCCAACTTAAGAGCGCCTATGAAAA
TAACTTGATGCCTTACACCAATTACACCTTTGATTTCAAAGGCGTGATTGACTACATTTTCTATTCCAAG
ACTCATATGAACGTGCTTGGTGTCCTGGGGCCTTTAGATCCTCAATGGCTGGTTGAGAACAACATCACTG
GGTGTCCACACCCTCACATCCCTTCAGACCACTTCTCACTGTTAACACAACTTGAACTCCACCCTCCACT
CCTGCCTCTTGTCAATGGTGTTCACTTGCCTAATCGGAGGTAG

Translation (550 aa):
MPKEKYDPPDPRRIYTIMSAEEVANGKKSHWAELEISGRVRSLSTSLWSLTHLTALHLNDNYLSRIPPDI
AKLHNLVYLDLSSNKLRSLPAELGNMVSLRELLLNNNLLRVLPYELGRLFQLQTLGLKGNPLSQDILNLY
QDPDGTRKLLNFMLDNLAVHPEQLPPRPWITLKERDQILPSASFTVMCYNVLCDKYATRQLYGYCPSWAL
NWEYRKKGIMEEIVNCDADIISLQEVETEQYFTLFLPALKERGYDGFFSPKSRAKIMSEQERKHVDGCAI
FFKTEKFTLVQKHTVEFNQVAMANSDGSEAMLNRVMTKDNIGVAVVLEVHKELFGAGMKPIHAADKQLLI
VANAHMHWDPEYSDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNSLPDSGVVEYLSN
GGVADNHKDFKELRYNECLMNFSCNGKNGSSEGRITHGFQLKSAYENNLMPYTNYTFDFKGVIDYIFYSK
THMNVLGVLGPLDPQWLVENNITGCPHPHIPSDHFSLLTQLELHPPLLPLVNGVHLPNRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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