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Report for CCDS45091.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45091.1 Public Homo sapiens 14 SDR39U1 24 110 108 CCDS HistoryNCBI Gene:56948Re-query CCDS DB by CCDS ID:45091.1Re-query CCDS DB by GeneID:56948See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45091.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000399395.8 ENSP00000382327.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000399395.8Link to Ensembl Protein Viewer:ENSP00000382327.3Re-query CCDS DB by Nucleotide ID:ENST00000399395Re-query CCDS DB by Protein ID:ENSP00000382327
Original member Current member NCBI NM_020195.3 NP_064580.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020195.3Link to Protein Sequence:NP_064580.2Re-query CCDS DB by Nucleotide ID:NM_020195Re-query CCDS DB by Protein ID:NP_064580Link to BLAST:NP_064580.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064580.2 293 Q9NRG7-2 293 100% 0 0

Chromosomal Locations for CCDS 45091.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 24440083 24440492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24440783 24440926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24441674 24441795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24442178 24442260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24442346 24442452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24442754 24442769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (882 nt):
ATGCGTGTGCTTGTGGGTGGCGGGACAGGCTTCATTGGGACAGCCCTAACCCAGCTGCTGAATGCCAGAG
GCCACGAAGTGACGTTGGTCTCCCGAAAGCCCGGGCCCGGCCGGATCACGTGGGATGAGCTCGCTGCATC
GGGGCTGCCGAGCTGCGATGCCGCCGTCAACCTGGCCGGAGAGAACATCCTCAACCCTCTCCGAAGATGG
AATGAAACCTTCCAAAAAGAGGTAATCGGCAGCCGCCTAGAGACCACCCAATTGCTGGCTAAAGCCATCA
CCAAAGCCCCACAACCCCCCAAGGCCTGGGTCTTAGTCACAGGTGTAGCTTACTACCAGCCCAGTCTGAC
TGCGGAGTATGATGAAGACAGCCCAGGAGGGGACTTTGACTTTTTCTCCAACCTCGTAACCAAATGGGAA
GCTGCAGCCAGGCTTCCTGGAGATTCTACACGCCAGGTGGTGGTGCGCTCAGGGGTTGTGCTGGGCCGTG
GGGGTGGTGCCATGGGCCACATGCTGCTGCCCTTTCGCCTGGGCCTGGGGGGCCCCATCGGCTCAGGCCA
CCAATTCTTCCCCTGGATACACATCGGGGACCTGGCAGGAATCCTGACCCATGCCCTTGAAGCAAACCAC
GTGCACGGGGTCCTGAATGGAGTGGCTCCATCCTCCGCCACTAATGCTGAGTTTGCCCAGACCTTGGGTG
CTGCCCTGGGCCGCCGAGCCTTCATCCCTCTCCCCAGCGCTGTGGTGCAAGCTGTCTTTGGGCGACAGCG
TGCCATCATGCTGCTGGAGGGCCAGAAGGTGATCCCACAGCGAACACTGGCCACTGGCTACCAGTATTCC
TTCCCAGAGCTAGGGGCTGCCTTAAAGGAAATTGTAGCCTAA

Translation (293 aa):
MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPGRITWDELAASGLPSCDAAVNLAGENILNPLRRW
NETFQKEVIGSRLETTQLLAKAITKAPQPPKAWVLVTGVAYYQPSLTAEYDEDSPGGDFDFFSNLVTKWE
AAARLPGDSTRQVVVRSGVVLGRGGGAMGHMLLPFRLGLGGPIGSGHQFFPWIHIGDLAGILTHALEANH
VHGVLNGVAPSSATNAEFAQTLGAALGRRAFIPLPSAVVQAVFGRQRAIMLLEGQKVIPQRTLATGYQYS
FPELGAALKEIVA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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