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Report for CCDS53986.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53986.1 Public Homo sapiens 16 C16orf96 24 110 108 CCDS HistoryNCBI Gene:342346Re-query CCDS DB by CCDS ID:53986.1Re-query CCDS DB by GeneID:342346See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53986.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000444310.5 ENSP00000415027.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000444310.5Link to Ensembl Protein Viewer:ENSP00000415027.3Re-query CCDS DB by Nucleotide ID:ENST00000444310Re-query CCDS DB by Protein ID:ENSP00000415027
Original member Current member NCBI NM_001145011.2 NP_001138483.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001145011.2Link to Protein Sequence:NP_001138483.1Re-query CCDS DB by Nucleotide ID:NM_001145011Re-query CCDS DB by Protein ID:NP_001138483Link to BLAST:NP_001138483.1
Original member Current member NCBI NM_001387219.1 NP_001374148.1 Accepted alive Link to Nucleotide Sequence:NM_001387219.1Link to Protein Sequence:NP_001374148.1Re-query CCDS DB by Nucleotide ID:NM_001387219Re-query CCDS DB by Protein ID:NP_001374148Link to BLAST:NP_001374148.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138483.1 1141 A6NNT2 1141 100% 0 0
NP_001374148.1 1141 A6NNT2 1141 100% 0 0

Chromosomal Locations for CCDS 53986.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 4556490 4556909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4571561 4571665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4574709 4574789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4574972 4575058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4575174 4576635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4578940 4579025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4580015 4580125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4587039 4587113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4588167 4588331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4591666 4591784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4592305 4592367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4593224 4593316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4594351 4594510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4594704 4594803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4599284 4599364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4600100 4600317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3426 nt):
ATGAGCTTCTCACTCACGTTCACCGAGCTGGCCAACATCGCCATCCCACAGTGCGGGGTGCTGAACTTCA
AGGCCCTGCACCTCCTGCTGCACGGCATCTTGGAGCACATCCACATGGCCGAGCTCAAGAAAGTCCTCTC
AGGCGATGAGGACTTCCTGCAGACCTCGCAGGTGGTCATCATGCCCAGGGAAGGAGACGCCCAGCCTATC
CTCAACCCCATGAAGAGGCTCAGCAATGTCTTCGACCACGTGGTGAGCCGCCTCGACAAGTTGGAGAACC
AGCTGGCCCTGCTGCAGGACCTGCCCTCCACTGCCCAGCTGCTGGAAGCCAGCCAGGGCACTGCCCGGCC
CGTCCAGGACCTGTGGCATCTGATCAAGCTCCGGAAGATGGTGGAGGGTCATGATGAAGTCATGGCCAAG
TCAATGCAGACCCTGCAGGACTTGCTCACTGATCTTCATGCACTCCAGGTCACCATCACAGCCCTCAGAA
AAGAAGTGGACATGCTGAAGAACATGCTTGACAAGGTACACCCAGAAAGAATGGACATCTTTGCTGAAGA
CTTCAAAATACAGAACTGGAAGATGGTTGCACTGCAGCGGGAAGTGGCTTCTCTCCAGAATAAGTTTAAA
ACCATCCCCAAAACCGAGGACATGGTGCTCTGGAGTGGCCTTCATGATGCCATGTTCACCTCAGAAATTG
GTTCATCACCACTGGACCTGTGGCAGTCTGTAGAGCAGCTCCCAGAGGCTGCCCTGGCCCAGACCACCAA
GTACCTTGAAGCTACTCGTGCCATCCAGGTCTCCGAGCCCGTCCAAAACCCCCAGCTACTGCAGACTGTC
TGGCATTATGAGGTCCCAGAGCTCCTCCCGGAGGGCTCATCTGCCCAAGCAGTTTCACTCAGCAGAGCCC
AGGAGCCAGCGCAGCCTCCGGCCCTCACGCCTGAGTCTGCACCTGGGTGCACAACTGAATTTGCACCTGG
GCCTGCACCTGGGACTGAACCTGTGCCAGGACTGGAGCTGGGGCTGGAGCTGGAGCCTGTGCCTGCCCTG
GGGCCTGTCCCAGGGCCCAGTGTGACACCTGGGTCCTTGCCAGCACCTTGGCCTGTGCTTGGACCTGTGC
CTGCCCCAGGTGCCCAGCCTCCACCACTGGGAGACTGGCCTGCACTCCCAAGACGCTGGCCTCTTCCCCA
AGGCTGGCCCAGGGTGGGCTCTTGGCCTCTGTGGGACTTAGGTGTCCTGCGGCCAACTCAGCCCCAACCC
TCCAGGGCCCCACCACCAGCCACTGAGTTTGGCTCATTGTGGCCTCGACCACTCCAGCCATATCAGTCTC
GCCAGGGAGAAGCCCTCCAGCTCGCAGCTGTCCAAGTAAAGGGGGAGGAAAATGATGTCCCCAGCCTAAG
GGGCCTTCGGGAGAGGGCCCGCAAGGATGGGGCCCCCAAGGATAGAACTCGCAAGGATGGGGTCCCCAAA
GATAGAGGTGGCAAGGATGTGGACCCCAAGGATAGAGCTCACAAGGATGATGTCCCCAAAGATAGAGGTG
GCAAGGATGTGGACCCCAAGGATAGAGCTCACAAGGATGATGTCCCCAAAGATAGAGGTGGCAAAGATGG
GGACCCCAAGGATAGAGTTGGCAAGGATGGGGCCCCCAAGGAAGCACAGCCTAAGGCTCCCCAGTCTGCC
CTTCACCGGCTGAAAACCACCGCTGCCATCGCCGCCGCTGCCGCCGCAGCCTACGCCGCTGCCACATCCT
CCGCTGCCCAGGCAGCCAAAGTTGCTGCCAAGTTTGTCAAGGATGCCCCAGCCACCAAAATGGCCGCCAT
TGCAACAGACACGGCTGCAGCTGGGCCCCTAGGGGTCTTTGCAGATGTCCTGGGTGCAGGGCCTTCCCGG
GGAGCCACAGAATCCCAGATCTTGGGCGATGATTCCGAAATCTACGAAATCCTCTCTCCCTCCTACTCTG
CTGCCAGCATCGGTCCCGATCCAGCCCTGTCCCAGGCCATGGTGGCTACCAAGCAGGCCATGAGCCCTGA
AGACAAGAAGAGGGCTGTCAAGTATTCCATGAGCCACATAGCCCAGATACCTGTCAAACACGACTCTCTG
AAGGAAGAATTTGCCCAGCTGTCCTGTAACCTGAACCAGCGCTTGAGTTATCTAGCCAATATGGGAGGTC
CTTCCAGCCTCGGGACAACAGTGGACATATTGCAGAAAAAGATTGGCAGCCTCCAGAAATCTAGGCTCAA
GGAGGAAGAACTTGAGAGAATTTGGGGCAACCAAATAGAGATGATGAAGGATCGCTACATCACTTTGGAC
AAGGCGGTGGAGAACCTGCAGATTCGCATGGATGAGTTCAAGACTCTCCAGGCTCAAATCAAAAGACTGG
AAATGAACAAGGTGAATAAGAGCACGATGGAGGAGGAGCTGAGAGAGAAAGCTGACAGGAGTGCCCTGGC
AGGCAAGGCAAGCCGCGTTGACCTGGAGACTGTGGCCTTGGAGCTGAACGAGATGATTCAGGGCATACTC
TTCAAGGTCACGATCCATGAGGACAGCTGGAAGAAGGCTATGGAGGAGCTCAGCAAGGACGTGAACACCA
AGTTAGTCCACAGTGATCTGGATCCCTTGAAGAAAGAAATGGAAGAGGTCTGGAAAATCGTCCGGAAGCT
GCTGATTGAGGGCTTAAGACTGGATCCTGACAGTGCTGCTGGCTTTAGGAGGAAGCTGTTCAAGCGCGTG
AAGTGCATCTCCTGTGACCGGCCTGTGGAGATGATGACTGGCCCACAGCTGATCACCATCCGCAAAGCCC
ACCTGCTGTCCCGGCTGCGGCCAGCCAGCGCCAACAGCTGCGAGTACTTGCAGCGGCAACAGATGAGGGA
ACAGCAGTGGCTGCAGCTCCAGGACCTCGGTATCCAGGAGGATTGTCAGCAGGACTGGGGTGATGGCCCC
CAAAACGCCACCAGCCTCAAGTGCAAGTCCTGCAACCTGTTGACGCTCTATCCCTACGGGGATCCCCACG
TGATCGACTATGACAGCGCCGAGGTGGACATCCTGGGCGTGGATGGGATCCTGTACAAAGGCCGCGTGAA
CAGCCAGCGTGGGGCTCAGCCCTTGGCCGTCGCAAAGGAGCTGGCAGCTGTGAAGGCTCCATCTCCCCCG
TCACAAAGCCTGTATGACCGTGTGCACTCCAGTGCCCTATTTGGCGCCATCTGCCCCCCCCTGTGCCCCC
GCTCCAGTGCCTGCTCAGCTGCCTCGGGCCCTCACCTGACGATGCCAGCTCGACCACCTTCCCTGCCACC
TCTGCTGCTGCTGCCACCGCTGATTCCATCCCTAAGGGACCCCCAGCAGGCCCCAGGGTCCACCAGGCTC
TCAAGAGCTCCACACATTGAGTCCCGAGTCGGCAGGAAGCCCCCCGAGGAGCCCGCCAACCCGTGA

Translation (1141 aa):
MSFSLTFTELANIAIPQCGVLNFKALHLLLHGILEHIHMAELKKVLSGDEDFLQTSQVVIMPREGDAQPI
LNPMKRLSNVFDHVVSRLDKLENQLALLQDLPSTAQLLEASQGTARPVQDLWHLIKLRKMVEGHDEVMAK
SMQTLQDLLTDLHALQVTITALRKEVDMLKNMLDKVHPERMDIFAEDFKIQNWKMVALQREVASLQNKFK
TIPKTEDMVLWSGLHDAMFTSEIGSSPLDLWQSVEQLPEAALAQTTKYLEATRAIQVSEPVQNPQLLQTV
WHYEVPELLPEGSSAQAVSLSRAQEPAQPPALTPESAPGCTTEFAPGPAPGTEPVPGLELGLELEPVPAL
GPVPGPSVTPGSLPAPWPVLGPVPAPGAQPPPLGDWPALPRRWPLPQGWPRVGSWPLWDLGVLRPTQPQP
SRAPPPATEFGSLWPRPLQPYQSRQGEALQLAAVQVKGEENDVPSLRGLRERARKDGAPKDRTRKDGVPK
DRGGKDVDPKDRAHKDDVPKDRGGKDVDPKDRAHKDDVPKDRGGKDGDPKDRVGKDGAPKEAQPKAPQSA
LHRLKTTAAIAAAAAAAYAAATSSAAQAAKVAAKFVKDAPATKMAAIATDTAAAGPLGVFADVLGAGPSR
GATESQILGDDSEIYEILSPSYSAASIGPDPALSQAMVATKQAMSPEDKKRAVKYSMSHIAQIPVKHDSL
KEEFAQLSCNLNQRLSYLANMGGPSSLGTTVDILQKKIGSLQKSRLKEEELERIWGNQIEMMKDRYITLD
KAVENLQIRMDEFKTLQAQIKRLEMNKVNKSTMEEELREKADRSALAGKASRVDLETVALELNEMIQGIL
FKVTIHEDSWKKAMEELSKDVNTKLVHSDLDPLKKEMEEVWKIVRKLLIEGLRLDPDSAAGFRRKLFKRV
KCISCDRPVEMMTGPQLITIRKAHLLSRLRPASANSCEYLQRQQMREQQWLQLQDLGIQEDCQQDWGDGP
QNATSLKCKSCNLLTLYPYGDPHVIDYDSAEVDILGVDGILYKGRVNSQRGAQPLAVAKELAAVKAPSPP
SQSLYDRVHSSALFGAICPPLCPRSSACSAASGPHLTMPARPPSLPPLLLLPPLIPSLRDPQQAPGSTRL
SRAPHIESRVGRKPPEEPANP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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