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Report for CCDS3696.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3696.1 Public Homo sapiens 4 AP1AR 24 110 108 CCDS HistoryNCBI Gene:55435Re-query CCDS DB by CCDS ID:3696.1Re-query CCDS DB by GeneID:55435See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3696.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000274000.10 ENSP00000274000.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000274000.10Link to Ensembl Protein Viewer:ENSP00000274000.5Re-query CCDS DB by Nucleotide ID:ENST00000274000Re-query CCDS DB by Protein ID:ENSP00000274000
Original member Current member NCBI NM_018569.6 NP_061039.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018569.6Link to Protein Sequence:NP_061039.3Re-query CCDS DB by Nucleotide ID:NM_018569Re-query CCDS DB by Protein ID:NP_061039Link to BLAST:NP_061039.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061039.3 302 Q63HQ0-1 302 100% 0 0

Chromosomal Locations for CCDS 3696.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 112232092 112232174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112253208 112253256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112254747 112254773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112257772 112257797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112260766 112260862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112262988 112263086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112265009 112265067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112265734 112265807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112266588 112266716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112268144 112268409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (909 nt):
ATGGGGAACTGCTGCTGGACGCAGTGCTTCGGACTGCTTCGCAAGGAAGCGGGGCGGCTGCAGCGAGTAG
GCGGCGGCGGAGGATCCAAGTATTTTAGAACATGCTCAAGAGGTGAGCACTTAACAATAGAGTTTGAGAA
TCTAGTAGAAAGTGATGAAGGGGAGAGCCCAGGAAGCAGTCATAGGCCTCTTACTGAGGAAGAAATTGTT
GACCTAAGAGAAAGGCATTATGATTCCATTGCCGAAAAACAAAAAGATCTTGATAAGAAAATTCAAAAAG
AGTTAGCCTTACAAGAAGAGAAGTTAAGACTAGAAGAAGAAGCTTTATACGCTGCACAGCGTGAAGCAGC
CAGGGCAGCAAAGCAGCGAAAGCTCTTGGAGCAAGAAAGGCAGAGAATTGTGCAGCAATATCATCCTTCC
AACAATGGAGAATATCAAAGTTCAGGACCAGAAGATGACTTCGAATCTTGTTTGAGAAATATGAAGTCAC
AGTATGAAGTTTTTCGAAGTAGTAGACTCTCATCAGATGCTACAGTTTTGACACCAAATACAGAAAGCAG
TTGTGATTTAATGACCAAAACTAAATCAACTAGTGGAAATGACGACAGCACATCCTTAGATCTAGAGTGG
GAAGATGAAGAAGGAATGAATAGAATGCTTCCAATGAGAGAACGTTCCAAAACAGAGGAAGACATTCTAC
GGGCAGCACTTAAGTATAGCAACAAGAAGACTGGAAGTAATCCTACATCAGCCTCTGATGATTCCAATGG
GCTGGAGTGGGAAAATGATTTTGTTAGTGCCGAAATGGATGATAATGGAAATTCCGAGTATTCTGGATTT
GTAAATCCTGTATTAGAACTGTCTGATTCTGGCATAAGGCATTCTGACACAGATCAACAGACTCGATAG

Translation (302 aa):
MGNCCWTQCFGLLRKEAGRLQRVGGGGGSKYFRTCSRGEHLTIEFENLVESDEGESPGSSHRPLTEEEIV
DLRERHYDSIAEKQKDLDKKIQKELALQEEKLRLEEEALYAAQREAARAAKQRKLLEQERQRIVQQYHPS
NNGEYQSSGPEDDFESCLRNMKSQYEVFRSSRLSSDATVLTPNTESSCDLMTKTKSTSGNDDSTSLDLEW
EDEEGMNRMLPMRERSKTEEDILRAALKYSNKKTGSNPTSASDDSNGLEWENDFVSAEMDDNGNSEYSGF
VNPVLELSDSGIRHSDTDQQTR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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