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Report for CCDS19316.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19316.1 Public Mus musculus 5 Phox2b 23 108 98 CCDS HistoryNCBI Gene:18935Re-query CCDS DB by CCDS ID:19316.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19316.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000012664.10 ENSMUSP00000012664.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000012664.10Link to Ensembl Protein Viewer:ENSMUSP00000012664.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000012664Re-query CCDS DB by Protein ID:ENSMUSP00000012664
Original member NCBI NM_008888.3 NP_032914.1 Updated not alive Link to Nucleotide Sequence:NM_008888.3Link to Protein Sequence:NP_032914.1Re-query CCDS DB by Nucleotide ID:NM_008888Re-query CCDS DB by Protein ID:NP_032914
Current member NCBI NM_008888.4 NP_032914.1 Accepted alive Link to Nucleotide Sequence:NM_008888.4Link to Protein Sequence:NP_032914.1Re-query CCDS DB by Nucleotide ID:NM_008888Re-query CCDS DB by Protein ID:NP_032914Link to BLAST:NP_032914.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032914.1 314 O35690 314 100% 0 0

Chromosomal Locations for CCDS 19316.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 67096107 67096622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67097676 67097863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67098701 67098941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGTATAAAATGGAATATTCTTACCTCAATTCCTCTGCCTACGAGTCCTGTATGGCCGGGATGGATACCT
CCAGCTTGGCTTCAGCATATGCAGACTTCAGTTCCTGCAGCCAGGCCAGTGGCTTCCAGTATAACCCGAT
AAGGACCACTTTTGGGGCCACGTCCGGTTGCCCGTCCCTCACGCCGGGATCCTGCAGCCTGGGCACCCTC
AGGGACCACCAGAGCAGTCCGTACGCCGCAGTTCCATACAAACTCTTCACCGACCACGGCGGCCTCAACG
AGAAACGCAAGCAGCGGCGCATCCGCACCACCTTCACAAGCGCGCAGCTCAAAGAGTTGGAGAGGGTCTT
CGCTGAGACGCACTACCCTGACATCTACACCAGGGAAGAGCTAGCACTGAAGATCGACCTCACCGAGGCG
AGAGTCCAGGTGTGGTTCCAGAACCGCCGGGCTAAGTTTCGCAAGCAGGAGCGCGCAGCCGCCGCTGCTG
CCGCCGCCGCCAAAAACGGCTCCTCCGGGAAGAAGTCTGACTCCTCCCGGGACGACGAGAGCAAAGAGGC
CAAGAGCACTGATCCCGACAGCACTGGGGGCCCGGGACCCAACCCCAACCCGACCCCCAGCTGTGGGGCA
AATGGCGGCGGTGGCGGAGGGCCCAGCCCAGCCGGAGCTCCGGGGGCGGCGGGCCCGGGGGGCCCGGGAG
GCGAACCCGGCAAGGGCGGTGCGGCTGCGGCTGCTGCTGCAGCTGCAGCGGCTGCAGCGGCGGCTGCGGC
TGCGGCGGCGGGAGGCCTGGCTGCGGCCGGAGGCCCCGGACAAGGCTGGGCTCCTGGCCCGGGCCCCATC
ACCTCCATCCCAGATTCTCTTGGGGGGCCCTTCGCCAGCGTCTTATCTTCGCTCCAAAGACCCAACGGTG
CCAAAGCCGCCTTAGTGAAGAGCAGTATGTTCTGA

Translation (314 aa):
MYKMEYSYLNSSAYESCMAGMDTSSLASAYADFSSCSQASGFQYNPIRTTFGATSGCPSLTPGSCSLGTL
RDHQSSPYAAVPYKLFTDHGGLNEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEA
RVQVWFQNRRAKFRKQERAAAAAAAAAKNGSSGKKSDSSRDDESKEAKSTDPDSTGGPGPNPNPTPSCGA
NGGGGGGPSPAGAPGAAGPGGPGGEPGKGGAAAAAAAAAAAAAAAAAAAAGGLAAAGGPGQGWAPGPGPI
TSIPDSLGGPFASVLSSLQRPNGAKAALVKSSMF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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