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Report for CCDS4357.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4357.1 Public Homo sapiens 5 GABRA1 24 110 108 CCDS HistoryNCBI Gene:2554Re-query CCDS DB by CCDS ID:4357.1Re-query CCDS DB by GeneID:2554See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4357.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000023897.10 ENSP00000023897.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000023897.10Link to Ensembl Protein Viewer:ENSP00000023897.6Re-query CCDS DB by Nucleotide ID:ENST00000023897Re-query CCDS DB by Protein ID:ENSP00000023897
Original member Current member EBI ENST00000393943.10 ENSP00000377517.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000393943.10Link to Ensembl Protein Viewer:ENSP00000377517.4Re-query CCDS DB by Nucleotide ID:ENST00000393943Re-query CCDS DB by Protein ID:ENSP00000377517
Original member Current member EBI ENST00000428797.7 ENSP00000393097.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000428797.7Link to Ensembl Protein Viewer:ENSP00000393097.2Re-query CCDS DB by Nucleotide ID:ENST00000428797Re-query CCDS DB by Protein ID:ENSP00000393097
Original member Current member EBI ENST00000437025.6 ENSP00000415441.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000437025.6Link to Ensembl Protein Viewer:ENSP00000415441.2Re-query CCDS DB by Nucleotide ID:ENST00000437025Re-query CCDS DB by Protein ID:ENSP00000415441
Original member Current member EBI ENST00000635880.1 ENSP00000489738.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000635880.1Link to Ensembl Protein Viewer:ENSP00000489738.1Re-query CCDS DB by Nucleotide ID:ENST00000635880Re-query CCDS DB by Protein ID:ENSP00000489738
Original member Current member EBI ENST00000638112.1 ENSP00000489839.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000638112.1Link to Ensembl Protein Viewer:ENSP00000489839.1Re-query CCDS DB by Nucleotide ID:ENST00000638112Re-query CCDS DB by Protein ID:ENSP00000489839
Original member Current member EBI ENST00000636573.1 ENSP00000490320.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000636573.1Link to Ensembl Protein Viewer:ENSP00000490320.1Re-query CCDS DB by Nucleotide ID:ENST00000636573Re-query CCDS DB by Protein ID:ENSP00000490320
Original member Current member EBI ENST00000637827.1 ENSP00000490804.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000637827.1Link to Ensembl Protein Viewer:ENSP00000490804.1Re-query CCDS DB by Nucleotide ID:ENST00000637827Re-query CCDS DB by Protein ID:ENSP00000490804
Original member Current member NCBI NM_000806.5 NP_000797.2 Accepted alive Link to Nucleotide Sequence:NM_000806.5Link to Protein Sequence:NP_000797.2Re-query CCDS DB by Nucleotide ID:NM_000806Re-query CCDS DB by Protein ID:NP_000797Link to BLAST:NP_000797.2
Original member Current member NCBI NM_001127643.2 NP_001121115.1 Accepted alive Link to Nucleotide Sequence:NM_001127643.2Link to Protein Sequence:NP_001121115.1Re-query CCDS DB by Nucleotide ID:NM_001127643Re-query CCDS DB by Protein ID:NP_001121115Link to BLAST:NP_001121115.1
Original member Current member NCBI NM_001127644.2 NP_001121116.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001127644.2Link to Protein Sequence:NP_001121116.1Re-query CCDS DB by Nucleotide ID:NM_001127644Re-query CCDS DB by Protein ID:NP_001121116Link to BLAST:NP_001121116.1
Original member Current member NCBI NM_001127645.2 NP_001121117.1 Accepted alive Link to Nucleotide Sequence:NM_001127645.2Link to Protein Sequence:NP_001121117.1Re-query CCDS DB by Nucleotide ID:NM_001127645Re-query CCDS DB by Protein ID:NP_001121117Link to BLAST:NP_001121117.1
Original member Current member NCBI NM_001127648.2 NP_001121120.1 Accepted alive Link to Nucleotide Sequence:NM_001127648.2Link to Protein Sequence:NP_001121120.1Re-query CCDS DB by Nucleotide ID:NM_001127648Re-query CCDS DB by Protein ID:NP_001121120Link to BLAST:NP_001121120.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000797.2 456 P14867 456 100% 0 0
NP_001121115.1 456 P14867 456 100% 0 0
NP_001121116.1 456 P14867 456 100% 0 0
NP_001121117.1 456 P14867 456 100% 0 0
NP_001121120.1 456 P14867 456 100% 0 0

Chromosomal Locations for CCDS 4357.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 161850811 161850884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 161854158 161854270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 161865721 161865788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 161873117 161873337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 161875560 161875642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 161882558 161882701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 161890898 161891050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 161895666 161895868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 161897111 161897422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1371 nt):
ATGAGGAAAAGTCCAGGTCTGTCTGACTGTCTTTGGGCCTGGATCCTCCTTCTGAGCACACTGACTGGAA
GAAGCTATGGACAGCCGTCATTACAAGATGAACTTAAAGACAATACCACTGTCTTCACCAGGATTTTGGA
CAGACTCCTAGATGGTTATGACAATCGCCTGAGACCAGGATTGGGAGAGCGTGTAACCGAAGTGAAGACT
GATATCTTCGTCACCAGTTTCGGACCCGTTTCAGACCATGATATGGAATATACAATAGATGTATTTTTCC
GTCAAAGCTGGAAGGATGAAAGGTTAAAATTTAAAGGACCTATGACAGTCCTCCGGTTAAATAACCTAAT
GGCAAGTAAAATCTGGACTCCGGACACATTTTTCCACAATGGAAAGAAGTCAGTGGCCCACAACATGACC
ATGCCCAACAAACTCCTGCGGATCACAGAGGATGGCACCTTGCTGTACACCATGAGGCTGACAGTGAGAG
CTGAATGTCCGATGCATTTGGAGGACTTCCCTATGGATGCCCATGCTTGCCCACTAAAATTTGGAAGTTA
TGCTTATACAAGAGCAGAAGTTGTTTATGAATGGACCAGAGAGCCAGCACGCTCAGTGGTTGTAGCAGAA
GATGGATCACGTCTAAACCAGTATGACCTTCTTGGACAAACAGTAGACTCTGGAATTGTCCAGTCAAGTA
CAGGAGAATATGTTGTTATGACCACTCATTTCCACTTGAAGAGAAAGATTGGCTACTTTGTTATTCAAAC
ATACCTGCCATGCATAATGACAGTGATTCTCTCACAAGTCTCCTTCTGGCTCAACAGAGAGTCTGTACCA
GCAAGAACTGTCTTTGGAGTAACAACTGTGCTCACCATGACAACATTGAGCATCAGTGCCAGAAACTCCC
TCCCTAAGGTGGCTTATGCAACAGCTATGGATTGGTTTATTGCCGTGTGCTATGCCTTTGTGTTCTCAGC
TCTGATTGAGTTTGCCACAGTAAACTATTTCACTAAGAGAGGTTATGCATGGGATGGCAAAAGTGTGGTT
CCAGAAAAGCCAAAGAAAGTAAAGGATCCTCTTATTAAGAAAAACAACACTTACGCTCCAACAGCAACCA
GCTACACCCCTAATTTGGCCAGGGGCGACCCGGGCTTAGCCACCATTGCTAAAAGTGCAACCATAGAACC
TAAAGAGGTCAAGCCCGAAACAAAACCACCAGAACCCAAGAAAACCTTTAACAGTGTCAGCAAAATTGAC
CGACTGTCAAGAATAGCCTTCCCGCTGCTATTTGGAATCTTTAACTTAGTCTACTGGGCTACGTATTTAA
ACAGAGAGCCTCAGCTAAAAGCCCCCACACCACATCAATAG

Translation (456 aa):
MRKSPGLSDCLWAWILLLSTLTGRSYGQPSLQDELKDNTTVFTRILDRLLDGYDNRLRPGLGERVTEVKT
DIFVTSFGPVSDHDMEYTIDVFFRQSWKDERLKFKGPMTVLRLNNLMASKIWTPDTFFHNGKKSVAHNMT
MPNKLLRITEDGTLLYTMRLTVRAECPMHLEDFPMDAHACPLKFGSYAYTRAEVVYEWTREPARSVVVAE
DGSRLNQYDLLGQTVDSGIVQSSTGEYVVMTTHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVP
ARTVFGVTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKRGYAWDGKSVV
PEKPKKVKDPLIKKNNTYAPTATSYTPNLARGDPGLATIAKSATIEPKEVKPETKPPEPKKTFNSVSKID
RLSRIAFPLLFGIFNLVYWATYLNREPQLKAPTPHQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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