NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS74791.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
74791.1 Public Homo sapiens 21 SETD4 24 110 108 CCDS HistoryNCBI Gene:54093Re-query CCDS DB by CCDS ID:74791.1Re-query CCDS DB by GeneID:54093See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 74791.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000399201.5 ENSP00000382152.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000399201.5Link to Ensembl Protein Viewer:ENSP00000382152.1Re-query CCDS DB by Nucleotide ID:ENST00000399201Re-query CCDS DB by Protein ID:ENSP00000382152
Original member Current member EBI ENST00000399205.5 ENSP00000382156.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000399205.5Link to Ensembl Protein Viewer:ENSP00000382156.1Re-query CCDS DB by Nucleotide ID:ENST00000399205Re-query CCDS DB by Protein ID:ENSP00000382156
Original member Current member NCBI NM_001007261.3 NP_001007262.1 Accepted alive Link to Nucleotide Sequence:NM_001007261.3Link to Protein Sequence:NP_001007262.1Re-query CCDS DB by Nucleotide ID:NM_001007261Re-query CCDS DB by Protein ID:NP_001007262Link to BLAST:NP_001007262.1

Chromosomal Locations for CCDS 74791.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 36043759 36043956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 36045582 36046011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 36048308 36048396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 36053583 36053620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 36057109 36057204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 36057384 36057384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (852 nt):
ATGAATGAGAGCCACAAGTCTGAATTTATAGAGCTGAGGAAGTGGCTGAAAGCTAGGAAGTTTCAAGATT
CAAACTTAGCGCCTGCTTGTTTTCCAGGTACAGGAAGAGGGCTGATGAGTCAAACATCCCTGCAGGAGGG
ACAGATGATTATTTCGTTGCCTGAGAGTTGCCTGCTCACCACGGACACAGTGATTCGAAGCTACTTAGGG
GCATACATTACTAAGTGGAAGCCTCCTCCATCTCCTCTGCTGGCGCTGTGCACCTTTTTAGTTTCAGAAA
AGCATGCTGGGCACCGATCTCTTTGGAAGCCTTACCTGGAGATTTTACCCAAGGCGTATACCTGCCCTGT
TTGTTTGGAGCCGGAAGTGGTGAACCTTCTTCCCAAATCTTTAAAAGCAAAGGCTGAAGAGCAGAGAGCC
CACGTGCAGGAGTTCTTTGCTTCCTCCAGAGACTTTTTCTCTTCTCTGCAGCCTCTGTTTGCGGAGGCTG
TTGACAGCATCTTCAGCTACAGTGCCCTGCTGTGGGCTTGGTGCACCGTCAACACCAGAGCCGTGTACCT
GAGGCCCAGGCAGCGGGAATGCCTTTCTGCAGAGCCGGACACCTGTGCACTCGCTCCGTACCTGGACCTG
CTGAATCATAGCCCACATGTCCAGGTAAAAGCAGCGTTTAATGAAGAAACTCATTCTTACGAAATTAGAA
CGACTTCACGTTGGAGAAAGCATGAAGAGGTATTCATCTGTTACGGCCCTCACGATAATCAACGGCTGTT
CCTGGAATACGGATTTGTTTCTGTCCATAATCCTCATGCTTGTGTTTATGTCTCAAGAGGTTGGAATCAA
CTTTGTTCTTAA

Translation (283 aa):
MNESHKSEFIELRKWLKARKFQDSNLAPACFPGTGRGLMSQTSLQEGQMIISLPESCLLTTDTVIRSYLG
AYITKWKPPPSPLLALCTFLVSEKHAGHRSLWKPYLEILPKAYTCPVCLEPEVVNLLPKSLKAKAEEQRA
HVQEFFASSRDFFSSLQPLFAEAVDSIFSYSALLWAWCTVNTRAVYLRPRQRECLSAEPDTCALAPYLDL
LNHSPHVQVKAAFNEETHSYEIRTTSRWRKHEEVFICYGPHDNQRLFLEYGFVSVHNPHACVYVSRGWNQ
LCS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH