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Report for CCDS9475.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9475.1 Public Homo sapiens 13 CLDN10 24 110 108 CCDS HistoryNCBI Gene:9071Re-query CCDS DB by CCDS ID:9475.1Re-query CCDS DB by GeneID:9071See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9475.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376873.7 ENSP00000366069.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000376873.7Link to Ensembl Protein Viewer:ENSP00000366069.2Re-query CCDS DB by Nucleotide ID:ENST00000376873Re-query CCDS DB by Protein ID:ENSP00000366069
Original member Current member NCBI NM_182848.4 NP_878268.1 Accepted alive Link to Nucleotide Sequence:NM_182848.4Link to Protein Sequence:NP_878268.1Re-query CCDS DB by Nucleotide ID:NM_182848Re-query CCDS DB by Protein ID:NP_878268Link to BLAST:NP_878268.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_878268.1 226 P78369-2 226 100% 0 0

Chromosomal Locations for CCDS 9475.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 95433834 95434047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95560132 95560293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95560382 95560463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95577231 95577338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95577900 95578014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (681 nt):
ATGTCCAGGGCGCAGATCTGGGCTCTGGTGTCTGGTGTCGGAGGGTTTGGAGCTCTCGTTGCTGCTACCA
CGTCCAATGAGTGGAAAGTGACCACGCGAGCCTCCTCGGTGATAACAGCCACTTGGGTTTACCAGGGTCT
GTGGATGAACTGCGCAGGTAACGCGTTGGGTTCTTTCCATTGCCGACCGCATTTTACTATCTTCAAAGTA
GCAGGTTATATACAGGCATGTAGAGGACTTATGATCGCTGCTGTCAGCCTGGGCTTCTTTGGTTCCATAT
TTGCGCTCTTTGGAATGAAGTGTACCAAAGTCGGAGGCTCCGATAAAGCCAAAGCTAAAATTGCTTGTTT
GGCTGGGATTGTATTCATACTGTCAGGGCTGTGCTCAATGACTGGATGTTCCCTATATGCAAACAAAATC
ACAACGGAATTCTTTGATCCTCTCTTTGTTGAGCAAAAGTATGAATTAGGAGCCGCTCTGTTTATTGGAT
GGGCAGGAGCCTCACTGTGCATAATTGGTGGTGTCATATTTTGCTTTTCAATATCTGACAACAACAAAAC
ACCCAGATACACATACAACGGGGCCACATCTGTCATGTCTTCTCGGACAAAGTATCATGGTGGAGAAGAT
TTTAAAACAACAAACCCTTCAAAACAGTTTGATAAAAATGCTTATGTCTAA

Translation (226 aa):
MSRAQIWALVSGVGGFGALVAATTSNEWKVTTRASSVITATWVYQGLWMNCAGNALGSFHCRPHFTIFKV
AGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKIACLAGIVFILSGLCSMTGCSLYANKI
TTEFFDPLFVEQKYELGAALFIGWAGASLCIIGGVIFCFSISDNNKTPRYTYNGATSVMSSRTKYHGGED
FKTTNPSKQFDKNAYV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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  UCSC Genome Browser
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