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Report for CCDS56471.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56471.1 Public Homo sapiens 7 TAX1BP1 24 110 108 CCDS HistoryNCBI Gene:8887Re-query CCDS DB by CCDS ID:56471.1Re-query CCDS DB by GeneID:8887See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 56471.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000433216.6 ENSP00000391907.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000433216.6Link to Ensembl Protein Viewer:ENSP00000391907.2Re-query CCDS DB by Nucleotide ID:ENST00000433216Re-query CCDS DB by Protein ID:ENSP00000391907
Original member Current member NCBI NM_001206902.2 NP_001193831.1 Accepted alive Link to Nucleotide Sequence:NM_001206902.2Link to Protein Sequence:NP_001193831.1Re-query CCDS DB by Nucleotide ID:NM_001206902Re-query CCDS DB by Protein ID:NP_001193831Link to BLAST:NP_001193831.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001193831.1 590 Q86VP1-4 590 100% 0 0

Chromosomal Locations for CCDS 56471.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 27769694 27769834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27785163 27785311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27785399 27785489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27787418 27787603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27792006 27792230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27793066 27793212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27794323 27794446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27796116 27796219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27799965 27800090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27816349 27816394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27816890 27817038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27827738 27827820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27828628 27828829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1773 nt):
ATGAAAGAAAAAGAAGAACTGTTAAAGTTAATTGCCGTTCTGGAAAAAGAAACAGCACAACTTCGAGAAC
AAGTTGGGAGAATGGAAAGAGAACTTAACCATGAGAAAGAAAGATGTGACCAACTGCAAGCAGAACAAAA
GGGTCTTACTGAAGTAACACAAAGCTTAAAAATGGAAAATGAAGAGTTTAAGAAGAGGTTCAGTGATGCT
ACATCCAAAGCCCATCAGCTTGAGGAAGATATTGTGTCAGTAACACATAAAGCAATTGAAAAAGAAACCG
AATTAGACAGTTTAAAGGACAAACTCAAGAAGGCACAACATGAAAGAGAACAACTTGAATGTCAGTTGAA
GACAGAGAAGGATGAAAAGGAACTTTATAAGGTACATTTGAAGAATACAGAAATAGAAAATACCAAGCTT
ATGTCAGAGGTCCAGACTTTAAAAAATTTAGATGGGAACAAAGAAAGCGTGATTACTCATTTCAAAGAAG
AGATTGGCAGGCTGCAGTTATGTTTGGCTGAAAAGGAAAATCTGCAAAGAACTTTCCTGCTTACAACCTC
AAGTAAAGAAGATACTTGTTTTTTAAAGGAGCAACTTCGTAAAGCAGAGGAACAGGTTCAGGCAACTCGG
CAAGAAGTTGTCTTTCTGGCTAAAGAACTCAGTGATGCTGTCAACGTACGAGACAGAACGATGGCAGACC
TGCATACTGCACGCTTGGAAAACGAGAAAGTGAAAAAGCAGTTAGCTGATGCAGTGGCAGAACTTAAACT
AAATGCTATGAAAAAAGATCAGGACAAGACTGATACACTGGAACACGAACTAAGAAGAGAAGTTGAAGAT
CTGAAACTCCGTCTTCAGATGGCTGCAGACCATTATAAAGAAAAATTTAAGGAATGCCAAAGGCTCCAAA
AACAAATAAACAAACTTTCAGATCAATCAGCTAATAATAATAATGTCTTCACAAAGAAAACGGGGAATCA
GCAGAAAGTGAATGATGCTTCAGTAAACACAGACCCAGCCACTTCTGCCTCTACTGTAGATGTAAAGCCA
TCACCTTCTGCAGCAGAGGCAGATTTTGACATAGTAACAAAGGGGCAAGTCTGTGAAATGACCAAAGAAA
TTGCTGACAAAACAGAAAAGTATAATAAATGTAAACAACTCTTGCAGGATGAGAAAGCAAAATGCAATAA
ATATGCTGATGAACTTGCAAAAATGGAGCTGAAATGGAAAGAACAAGTGAAAATTGCTGAAAATGTAAAA
CTTGAACTAGCTGAAGTACAGGACAATTATAAAGAACTTAAAAGGAGTCTAGAAAATCCAGCAGAAAGGA
AAATGGAAGATGGAGCAGATGGTGCTTTTTACCCAGATGAAATACAAAGGCCACCTGTCAGAGTCCCCTC
TTGGGGACTGGAAGACAATGTTGTCTGCAGCCAGCCTGCTCGAAACTTTAGTCGGCCTGATGGCTTAGAG
GACTCTGAGGATAGCAAAGAAGATGAGAATGTGCCTACTGCTCCTGATCCTCCAAGTCAACATTTACGTG
GGCATGGGACAGGCTTTTGCTTTGATTCCAGCTTTGATGTTCACAAGAAGTGTCCCCTCTGTGAGTTAAT
GTTTCCTCCTAACTATGATCAGAGCAAATTTGAAGAACATGTTGAAAGTCACTGGAAGGTGTGCCCGATG
TGCAGCGAGCAGTTCCCTCCTGACTATGACCAGCAGGTGTTTGAAAGGCATGTGCAGACCCATTTTGATC
AGAATGTTCTAAATTTTGACTAG

Translation (590 aa):
MKEKEELLKLIAVLEKETAQLREQVGRMERELNHEKERCDQLQAEQKGLTEVTQSLKMENEEFKKRFSDA
TSKAHQLEEDIVSVTHKAIEKETELDSLKDKLKKAQHEREQLECQLKTEKDEKELYKVHLKNTEIENTKL
MSEVQTLKNLDGNKESVITHFKEEIGRLQLCLAEKENLQRTFLLTTSSKEDTCFLKEQLRKAEEQVQATR
QEVVFLAKELSDAVNVRDRTMADLHTARLENEKVKKQLADAVAELKLNAMKKDQDKTDTLEHELRREVED
LKLRLQMAADHYKEKFKECQRLQKQINKLSDQSANNNNVFTKKTGNQQKVNDASVNTDPATSASTVDVKP
SPSAAEADFDIVTKGQVCEMTKEIADKTEKYNKCKQLLQDEKAKCNKYADELAKMELKWKEQVKIAENVK
LELAEVQDNYKELKRSLENPAERKMEDGADGAFYPDEIQRPPVRVPSWGLEDNVVCSQPARNFSRPDGLE
DSEDSKEDENVPTAPDPPSQHLRGHGTGFCFDSSFDVHKKCPLCELMFPPNYDQSKFEEHVESHWKVCPM
CSEQFPPDYDQQVFERHVQTHFDQNVLNFD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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