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Report for CCDS47856.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47856.1 Public Homo sapiens 8 RB1CC1 24 110 108 CCDS HistoryNCBI Gene:9821Re-query CCDS DB by CCDS ID:47856.1Re-query CCDS DB by GeneID:9821See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47856.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000435644.6 ENSP00000396067.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000435644.6Link to Ensembl Protein Viewer:ENSP00000396067.2Re-query CCDS DB by Nucleotide ID:ENST00000435644Re-query CCDS DB by Protein ID:ENSP00000396067
Original member Current member NCBI NM_001083617.2 NP_001077086.1 Accepted alive Link to Nucleotide Sequence:NM_001083617.2Link to Protein Sequence:NP_001077086.1Re-query CCDS DB by Nucleotide ID:NM_001083617Re-query CCDS DB by Protein ID:NP_001077086Link to BLAST:NP_001077086.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001077086.1 1591 Q8TDY2-2 1591 100% 0 0

Chromosomal Locations for CCDS 47856.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 52623782 52623859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 52624717 52624787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 52628041 52628168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 52630470 52630528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 52634921 52634968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 52636015 52636069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 52642351 52642591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 52642704 52642812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 52645702 52645867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 52656008 52657908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 52657998 52658124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 52658873 52658976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 52660596 52660657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 52660926 52661007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 52661095 52661281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 52661535 52661719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 52668021 52668191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 52673845 52674274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 52676369 52676571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 52683549 52683719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 52683887 52684013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 52685399 52685469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4776 nt):
ATGAAGTTATATGTATTTCTGGTTAACACTGGAACTACTCTAACATTTGACACTGAACTTACAGTGCAAA
CTGTGGCAGACCTTAAGCATGCCATTCAAAGCAAATACAAGATTGCTATTCAACACCAGGTGCTGGTGGT
CAATGGAGGAGAATGCATGGCTGCAGATCGAAGAGTGTGTACCTACAGTGCTGGGACGGATACAAATCCA
ATTTTTCTTTTTAACAAAGAAATGATCTTATGTGATCGTCCACCTGCTATTCCTAAAACTACCTTTTCGA
CAGAAAATGACATGGAAATAAAAGTTGAAGAATCTCTTATGATGCCTGCAGTTTTTCATACTGTTGCTTC
AAGGACACAGCTTGCATTGGAAATGTATGAAGTTGCCAAGAAACTTTGTTCTTTTTGTGAAGGTCTTGTA
CATGATGAACATCTTCAACACCAAGGCTGGGCTGCAATCATGGCCAACCTGGAGGACTGTTCAAATTCAT
ACCAAAAGCTACTTTTCAAGTTTGAAAGTATTTATTCAAATTATCTGCAGTCCATAGAAGACATCAAGTT
AAAACTTACTCATTTAGGAACTGCAGTTTCAGTAATGGCCAAGATTCCACTGTTGGAGTGCCTAACCAGA
CATAGTTACAGAGAATGTTTGGGAAGACTGGATTCTTTACCTGAACATGAAGACTCAGAAAAAGCTGAGA
TGAAAAGATCCACTGAACTGGTGCTCTCTCCTGATATGCCTAGAACAACTAACGAATCTTTGTTAACCTC
ATTTCCCAAGTCAGTGGAACATGTGTCCCCAGATACCGCAGATGCTGAAAGTGGCAAAGAAATTAGGGAA
TCTTGTCAAAGTACTGTTCATCAGCAAGATGAAACTACGATTGACACTAAAGATGGTGATCTGCCCTTTT
TTAATGTCTCTTTGTTAGACTGGATAAATGTTCAAGATAGACCTAATGATGTGGAATCTTTGGTCAGGAA
GTGCTTTGATTCTATGAGCAGGCTTGATCCAAGGATTATTCGACCATTTATAGCAGAATGCCGTCAAACT
ATTGCCAAACTTGATAATCAGAATATGAAAGCCATTAAAGGACTTGAAGATCGGCTCTACGCCCTGGACC
AGATGATTGCTAGCTGTGGCCGACTGGTGAATGAACAGAAAGAGCTTGCTCAGGGATTTTTAGCTAATCA
GAAGAGAGCTGAAAACTTAAAGGATGCATCTGTATTACCTGATTTATGCCTGAGTCACGCAAATCAGTTG
ATGATTATGTTGCAAAATCATAGAAAACTGTTAGATATTAAGCAGAAGTGTACCACTGCCAAACAAGAAC
TAGCAAATAACCTACATGTCAGACTGAAGTGGTGTTGCTTTGTAATGCTTCATGCTGATCAAGATGGAGA
GAAGTTACAAGCTTTGCTCCGCCTCGTAATAGAGCTGTTAGAAAGAGTCAAAATTGTTGAAGCTCTTAGT
ACAGTTCCTCAGATGTACTGCTTAGCTGTTGTTGAGGTTGTAAGAAGAAAAATGTTCATAAAACACTACA
GGGAGTGGGCTGGTGCTTTAGTCAAAGATGGAAAGAGATTATATGAAGCAGAAAAATCAAAAAGGGAATC
CTTTGGGAAATTATTTAGGAAGTCTTTTTTAAGAAATCGTCTGTTTAGGGGACTGGACTCCTGGCCCCCT
TCCTTTTGTACTCAAAAGCCTCGAAAGTTTGACTGTGAACTTCCAGATATTTCATTAAAAGATTTACAGT
TTCTGCAATCATTTTGTCCTTCGGAAGTTCAGCCATTCCTCAGGGTTCCCTTACTTTGTGACTTTGAACC
TCTACACCAGCATGTACTTGCTCTACATAATTTGGTAAAAGCAGCACAAAGTTTGGATGAAATGTCACAG
ACCATTACAGATCTACTGAGTGAACAAAAGGCATCTGTGAGTCAGACATCCCCACAGTCTGCTTCTTCAC
CAAGGATGGAAAGTACAGCAGGAATTACAACTACTACCTCACCGAGAACTCCTCCACCACTGACTGTTCA
GGATCCCTTATGTCCTGCAGTTTGTCCCTTAGAAGAATTATCTCCAGATAGTATTGATGCACATACGTTT
GATTTTGAAACTATTCCCCATCCAAACATAGAACAGACTATTCACCAAGTTTCTTTAGACTTGGATTCAT
TAGCAGAAAGTCCTGAATCAGATTTTATGTCTGCTGTGAATGAGTTTGTAATAGAAGAAAATTTGTCGTC
TCCTAATCCTATAAGTGATCCACAAAGCCCAGAAATGATGGTGGAATCACTTTATTCATCAGTTATCAAT
GCGATAGACAGTAGACGAATGCAGGATACAAATGTATGTGGTAAGGAGGATTTTGGAGATCATACTTCTC
TGAATGTCCAGTTGGAAAGATGTAGAGTTGTTGCCCAAGACTCTCACTTCAGTATACAAACCATTAAGGA
AGACCTTTGCCACTTTAGAACATTTGTACAAAAAGAACAGTGTGACTTCTCAAATTCATTAAAATGTACA
GCAGTAGAAATAAGAAACATTATTGAAAAAGTAAAATGTTCTCTGGAAATAACACTAAAAGAAAAACATC
AAAAAGAACTACTGTCTTTAAAAAATGAATATGAAGGTAAACTTGACGGACTAATAAAGGAAACTGAAGA
GAATGAAAACAAAATTAAAAAATTGAAGGGAGAGTTAGTATGCCTTGAGGAGGTTTTACAAAATAAAGAT
AATGAATTTGCTTTGGTTAAACATGAAAAAGAAGCTGTAATCTGCCTGCAGAATGAAAAGGATCAGAAGT
TGTTAGAGATGGAAAATATAATGCACTCTCAAAATTGTGAAATTAAAGAACTGAAGCAGTCACGAGAAAT
AGTGTTAGAAGACTTAAAAAAGCTCCATGTTGAAAATGATGAGAAGTTACAGTTATTGAGGGCAGAACTT
CAGTCCTTGGAGCAAAGTCATCTAAAGGAATTAGAGGACACACTTCAGGTTAGGCACATACAAGAGTTTG
AGAAGGTTATGACAGACCACAGAGTTTCTTTGGAGGAATTAAAAAAGGAAAACCAACAAATAATTAATCA
AATACAAGAATCTCATGCTGAAATTATCCAGGAAAAAGAAAAACAGTTACAGGAATTAAAACTCAAGGTT
TCTGATTTGTCAGACACGAGATGCAAGTTAGAGGTTGAACTTGCGTTGAAGGAAGCAGAAACTGATGAAA
TAAAAATTTTGCTGGAAGAAAGCAGAGCCCAGCAGAAGGAGACCTTGAAATCTCTTCTTGAACAAGAGAC
AGAAAATTTGAGAACAGAAATTAGTAAACTCAACCAAAAGATTCAGGATAATAATGAAAATTATCAGGTG
GGCTTAGCAGAGCTAAGAACTTTAATGACAATTGAAAAAGATCAGTGTATTTCCGAGTTAATTAGTAGAC
ATGAAGAAGAATCTAATATACTTAAAGCTGAATTAAACAAAGTAACATCTTTGCATAACCAAGCATTTGA
AATAGAAAAAAACCTAAAAGAACAAATAATTGAACTGCAGAGTAAATTGGATTCAGAATTGAGTGCTCTT
GAAAGACAAAAAGATGAAAAAATTACCCAACAAGAAGAGAAATACGAAGCTATTATCCAGAACCTTGAGA
AAGACAGACAAAAATTGGTCAGCAGCCAGGAGCAAGACAGAGAACAGTTAATTCAGAAGCTTAATTGTGA
AAAAGATGAAGCTATTCAGACTGCCCTAAAAGAATTTAAATTGGAGAGAGAAGTTGTTGAGAAAGAGTTA
TTAGAAAAAGTTAAACATCTTGAGAATCAAATAGCAAAAAGTCCTGCCATTGACTCTACCAGAGGAGATT
CTTCAAGCTTAGTTGCTGAACTTCAAGAAAAGCTTCAGGAAGAAAAAGCTAAGTTTCTAGAACAACTTGA
AGAGCAAGAAAAAAGAAAGAATGAAGAAATGCAAAATGTTCGAACATCTTTGATTGCGGAACAACAGACC
AATTTTAACACTGTTTTAACAAGAGAGAAAATGAGAAAAGAAAACATAATAAATGATCTTAGTGATAAGT
TGAAAAGTACAATGCAGCAACAAGAACGGGATAAAGATTTGATAGAGTCACTTTCTGAAGATCGAGCTCG
TTTGCTTGAGGAAAAGAAAAAGCTTGAAGAAGAAGTCAGTAAGTTGCGTAGTAGCAGTTTTGTTCCTTCA
CCATATGTAGCTACAGCCCCAGAACTTTATGGAGCTTGTGCACCTGAACTCCCAGGTGAATCAGATAGAT
CCGCTGTGGAAACAGCAGATGAAGGAAGAGTGGATTCAGCAATGGAGACAAGCATGATGTCTGTACAAGA
AAATATTCATATGTTGTCTGAAGAAAAACAGCGGATAATGCTGTTAGAACGAACATTGCAATTGAAAGAA
GAAGAAAATAAACGGTTAAATCAAAGACTGATGTCTCAGAGCATGTCTTCAGTATCTTCAAGGCATTCTG
AAAAGATAGCTATTAGAGATTTTCAGGTGGGAGATTTGGTACTCATCATCCTAGACGAACGCCATGACAA
TTATGTGTTATTTACTGTTAGTCCTACTTTATATTTTCTACATTCAGAGTCTCTACCTGCCCTGGATCTC
AAACCAGCTTCAGGTGCATCTAGAAGACCCTGGGTACTTGGAAAAGTAATGGAAAAAGAATACTGTCAAG
CCAAAAAGGCACAAAACAGATTTAAAGTTCCTTTGGGGACAAAGTTTTACAGAGTGAAAGCCGTATCATG
GAATAAGAAAGTATAA

Translation (1591 aa):
MKLYVFLVNTGTTLTFDTELTVQTVADLKHAIQSKYKIAIQHQVLVVNGGECMAADRRVCTYSAGTDTNP
IFLFNKEMILCDRPPAIPKTTFSTENDMEIKVEESLMMPAVFHTVASRTQLALEMYEVAKKLCSFCEGLV
HDEHLQHQGWAAIMANLEDCSNSYQKLLFKFESIYSNYLQSIEDIKLKLTHLGTAVSVMAKIPLLECLTR
HSYRECLGRLDSLPEHEDSEKAEMKRSTELVLSPDMPRTTNESLLTSFPKSVEHVSPDTADAESGKEIRE
SCQSTVHQQDETTIDTKDGDLPFFNVSLLDWINVQDRPNDVESLVRKCFDSMSRLDPRIIRPFIAECRQT
IAKLDNQNMKAIKGLEDRLYALDQMIASCGRLVNEQKELAQGFLANQKRAENLKDASVLPDLCLSHANQL
MIMLQNHRKLLDIKQKCTTAKQELANNLHVRLKWCCFVMLHADQDGEKLQALLRLVIELLERVKIVEALS
TVPQMYCLAVVEVVRRKMFIKHYREWAGALVKDGKRLYEAEKSKRESFGKLFRKSFLRNRLFRGLDSWPP
SFCTQKPRKFDCELPDISLKDLQFLQSFCPSEVQPFLRVPLLCDFEPLHQHVLALHNLVKAAQSLDEMSQ
TITDLLSEQKASVSQTSPQSASSPRMESTAGITTTTSPRTPPPLTVQDPLCPAVCPLEELSPDSIDAHTF
DFETIPHPNIEQTIHQVSLDLDSLAESPESDFMSAVNEFVIEENLSSPNPISDPQSPEMMVESLYSSVIN
AIDSRRMQDTNVCGKEDFGDHTSLNVQLERCRVVAQDSHFSIQTIKEDLCHFRTFVQKEQCDFSNSLKCT
AVEIRNIIEKVKCSLEITLKEKHQKELLSLKNEYEGKLDGLIKETEENENKIKKLKGELVCLEEVLQNKD
NEFALVKHEKEAVICLQNEKDQKLLEMENIMHSQNCEIKELKQSREIVLEDLKKLHVENDEKLQLLRAEL
QSLEQSHLKELEDTLQVRHIQEFEKVMTDHRVSLEELKKENQQIINQIQESHAEIIQEKEKQLQELKLKV
SDLSDTRCKLEVELALKEAETDEIKILLEESRAQQKETLKSLLEQETENLRTEISKLNQKIQDNNENYQV
GLAELRTLMTIEKDQCISELISRHEEESNILKAELNKVTSLHNQAFEIEKNLKEQIIELQSKLDSELSAL
ERQKDEKITQQEEKYEAIIQNLEKDRQKLVSSQEQDREQLIQKLNCEKDEAIQTALKEFKLEREVVEKEL
LEKVKHLENQIAKSPAIDSTRGDSSSLVAELQEKLQEEKAKFLEQLEEQEKRKNEEMQNVRTSLIAEQQT
NFNTVLTREKMRKENIINDLSDKLKSTMQQQERDKDLIESLSEDRARLLEEKKKLEEEVSKLRSSSFVPS
PYVATAPELYGACAPELPGESDRSAVETADEGRVDSAMETSMMSVQENIHMLSEEKQRIMLLERTLQLKE
EENKRLNQRLMSQSMSSVSSRHSEKIAIRDFQVGDLVLIILDERHDNYVLFTVSPTLYFLHSESLPALDL
KPASGASRRPWVLGKVMEKEYCQAKKAQNRFKVPLGTKFYRVKAVSWNKKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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