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Report for CCDS74539.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
74539.1 Public Homo sapiens 2 THNSL2 24 110 108 CCDS HistoryNCBI Gene:55258Re-query CCDS DB by CCDS ID:74539.1Re-query CCDS DB by GeneID:55258See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 74539.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377254.7 ENSP00000366464.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000377254.7Link to Ensembl Protein Viewer:ENSP00000366464.4Re-query CCDS DB by Nucleotide ID:ENST00000377254Re-query CCDS DB by Protein ID:ENSP00000366464
Original member Current member NCBI NM_001244678.2 NP_001231607.1 Accepted alive Link to Nucleotide Sequence:NM_001244678.2Link to Protein Sequence:NP_001231607.1Re-query CCDS DB by Nucleotide ID:NM_001244678Re-query CCDS DB by Protein ID:NP_001231607Link to BLAST:NP_001231607.1
Original member Current member NCBI NM_001384382.1 NP_001371311.1 Accepted alive Link to Nucleotide Sequence:NM_001384382.1Link to Protein Sequence:NP_001371311.1Re-query CCDS DB by Nucleotide ID:NM_001384382Re-query CCDS DB by Protein ID:NP_001371311Link to BLAST:NP_001371311.1

Chromosomal Locations for CCDS 74539.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 88175305 88175401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 88178783 88179013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 88182699 88182847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 88182948 88183073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 88185898 88185975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (681 nt):
ATGGACATTATCGTTCTGCTGCCCAAAGGTCACTGCACAAAGATTCAGGAGCTCCAGATGACAACGGTGC
TGAAGCAGAACGTACATGTGTTTGGAGTGGAGGGAAACAGCGATGAGCTCGATGAGCCGATCAAGACTGT
GTTTGCCGATGTGGCTTTTGTCAAGAAGCACAATCTGATGAGCCTGAATTCGATCAACTGGTCCCGGGTC
CTGGTGCAGATGGCCCATCACTTCTTTGCTTACTTCCAGTGTACGCCATCCTTGGACACACATCCCCTAC
CCCTGGTGGAGGTGGTTGTGCCAACAGGGGCTGCCGGTAACCTTGCAGCTGGGTACATTGCTCAAAAGAT
AGGCCTGCCCATCCGTCTGGTCGTGGCAGTGAACCGCAATGACATCATCCACAGGACTGTCCAGCAGGGA
GACTTCTCTCTCTCTGAGGCTGTTAAATCAACCTTGGCATCAGCTATGGACATTCAGGTGCCCTACAACA
TGGAGAGGGTGTTCTGGCTGCTCTCTGGCTCTGACAGCCAGGTGACAAGAGCCCTCATGGAGCAGTTTGA
AAGGACCCAAAGTGTGAATCTGCCCAAGGAACTGCACAGCAAGCACTCCCCGGTGCTGCCTCGCCCCTGC
CTCTGCAGCCAAGTTCCCGGAAGCTGTCCTGGCTGCTGGCCTGACCCCTGA

Translation (226 aa):
MDIIVLLPKGHCTKIQELQMTTVLKQNVHVFGVEGNSDELDEPIKTVFADVAFVKKHNLMSLNSINWSRV
LVQMAHHFFAYFQCTPSLDTHPLPLVEVVVPTGAAGNLAAGYIAQKIGLPIRLVVAVNRNDIIHRTVQQG
DFSLSEAVKSTLASAMDIQVPYNMERVFWLLSGSDSQVTRALMEQFERTQSVNLPKELHSKHSPVLPRPC
LCSQVPGSCPGCWPDP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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