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Report for CCDS63091.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
63091.1 Public Homo sapiens 2 CARF 24 110 108 CCDS HistoryNCBI Gene:79800Re-query CCDS DB by CCDS ID:63091.1Re-query CCDS DB by GeneID:79800See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 63091.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000320443.12 ENSP00000316224.9 Accepted alive Link to Ensembl Transcript Viewer:ENST00000320443.12Link to Ensembl Protein Viewer:ENSP00000316224.9Re-query CCDS DB by Nucleotide ID:ENST00000320443Re-query CCDS DB by Protein ID:ENSP00000316224
Original member Current member EBI ENST00000428585.5 ENSP00000396221.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000428585.5Link to Ensembl Protein Viewer:ENSP00000396221.1Re-query CCDS DB by Nucleotide ID:ENST00000428585Re-query CCDS DB by Protein ID:ENSP00000396221
Original member Current member NCBI NM_001282910.3 NP_001269839.1 Accepted alive Link to Nucleotide Sequence:NM_001282910.3Link to Protein Sequence:NP_001269839.1Re-query CCDS DB by Nucleotide ID:NM_001282910Re-query CCDS DB by Protein ID:NP_001269839Link to BLAST:NP_001269839.1
Original member Current member NCBI NM_001282911.3 NP_001269840.1 Accepted alive Link to Nucleotide Sequence:NM_001282911.3Link to Protein Sequence:NP_001269840.1Re-query CCDS DB by Nucleotide ID:NM_001282911Re-query CCDS DB by Protein ID:NP_001269840Link to BLAST:NP_001269840.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269839.1 649 Q8N187-3 649 100% 0 0
NP_001269840.1 649 Q8N187-3 649 100% 0 0

Chromosomal Locations for CCDS 63091.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 202941903 202941980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 202952559 202952679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 202954005 202954134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 202955674 202955758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 202961237 202961426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 202966978 202967098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 202969919 202970062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 202971505 202971738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 202974334 202974496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 202977269 202977332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 202981555 202981685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 202982072 202982441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 202983506 202983624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1950 nt):
ATGGAACAATCTAATGATTCATTAAGAGTCAACCATAATGACGGTGAAGAGTCAAAAACCAGTGCTCAAG
TATTTGAGATGATCGTTGCCAGCCCAACAGAAAATGGACAGGTACTTCGTGTAATTCCACCTACCCAGAC
AGGAATGGCACAAGTGATTATACCTCAGGGGCAACTTGTGGATGTGAATAGTCCTCGGGATGTCCCTGAA
GAGAAACCCAGTAACAGAAACTTACCAACTGTAAGAGTGGATACTCTAGCAGACAATACCAGCAATTACA
TTCTTCATCCTCAAACATCCTTCCCATTGCCCAAAAAGTCAGTGACCGGAATGCTGGAAGAACCCCTTCT
GGGGCCTCTTCAGCCACTTTCTTCTAATACACCTATATGGGCCTGCCGTCTTAGGAGCTGTGAGAAAATT
GGAGATTCATACCGTGGCTACTGTGTAAGTGAGACTGAATTAGAAAGTGTCCTAACATTTCACAAGCAGC
AAACACAGAGTGTTTGGGGGACCCGTCAGTCTCCAAGCCCAGCCAAGCCTGCTACACGCTTGATGTGGAA
ATCCCAGTATGTTCCATATGATGGAATCCCATTTGTTAATGCAGGGAGTAGAGCTGTGGTAATGGAGTGT
CAGTATGGGCCAAGAAGAAAAGGTTTCCAGTTAAAAAAAGTCAGTGAGCAGGAAAGCAGGTCTTGTCAGC
TCTACAAAGCCACTTGTCCAGCTCGGATTTACATTAAAAAGGTACAGAAGTTTCCTGAATATAGAGTTCC
TACAGACCCCAAAATTGACAAGAAAATTATCAGAATGGAGCAGGAGAAAGCTTTTAACATGCTAAAGAAG
AACTTGGTAGATGCTGGTGGTGTTCTTAGGTGGTATGTACAGTTACCTACACAGCAAGCTCATCAGTATC
ATGAATTAGAGACTCCCTGCCTCACTTTGTCACCTTCTCCTTTTCCTGTGTCTTCTCTTGAAGAAGAGGA
AACTGCAGTTAGAGATGAGAATTGTGCATTACCCTCACGTTTACATCCTCAAGTAGCACATAAGATTCAA
GAATTAGTATCACAGGGAATAGAACAAGTGTATGCAGTAAGGAAACAGCTAAGAAAATTTGTGGAAAGGG
AACTGTTCAAACCCGATGAGGTACCTGAAAGACATAATTTATCTTTTTTTCCAACTGTAAATGATATAAA
AAATCACATCCATGAGGTACAGAAATCCTTGAGAAATGGAGATACGGTATATAACTCAGAGATTATTCCA
GCAACGCTTCAATGGACTACAGACAGTGGGAATATTCTCAAAGAGACCATGACAGTTACATTTGCAGAAG
GAAATTCACCAGGAGAATCAATTACCACCAAAGTGGAAACAAATCAGACCAGGGGTTCTTTGTCTCCTGA
GCCAACCCACTTGCTCTCCTCACTCTCCTCATTTCAGCCCAAAATATTTACACAACTACAGGGTTTGCAG
TTACAACCAAGGTACACCTCTCCTGATGAATCACCAGCTGTGGTATCAGTAAATAACCAGCCGTCCTCTA
GTCCTTCAGGACTTCTGGATACAATAGGAAGTGCTGTAATGAATAATAATTCTCTACTGCTTGGTCAAAG
TCATAGCCTTCAAAGAGATACATGCTTAACCCAAAACAATAGTACTGCCTCCACCATGGGTAACCTTCCA
GAACCAGATCAAAATCTAGTTGCAATGGACGAGCTGGTAGAAGTTGGAGATGTTGAGGATACAGGGAATC
TGGAAGGAACTGTTCATCGGATTCTGTTGGGAGATGTGCAGACTATTCCAATACAGATTATAGACAACCA
CTCAGCTCTTATTGAAGAAAATCCAGAAAGTACCATTTCTGTGAGCCAAGTTAAACAAGAACCCAAAGAA
CCAGCATTGTCTATGGAAGCAAAAAAAACTGTGGACTATAAGAAATTATCTGCTACATAA

Translation (649 aa):
MEQSNDSLRVNHNDGEESKTSAQVFEMIVASPTENGQVLRVIPPTQTGMAQVIIPQGQLVDVNSPRDVPE
EKPSNRNLPTVRVDTLADNTSNYILHPQTSFPLPKKSVTGMLEEPLLGPLQPLSSNTPIWACRLRSCEKI
GDSYRGYCVSETELESVLTFHKQQTQSVWGTRQSPSPAKPATRLMWKSQYVPYDGIPFVNAGSRAVVMEC
QYGPRRKGFQLKKVSEQESRSCQLYKATCPARIYIKKVQKFPEYRVPTDPKIDKKIIRMEQEKAFNMLKK
NLVDAGGVLRWYVQLPTQQAHQYHELETPCLTLSPSPFPVSSLEEEETAVRDENCALPSRLHPQVAHKIQ
ELVSQGIEQVYAVRKQLRKFVERELFKPDEVPERHNLSFFPTVNDIKNHIHEVQKSLRNGDTVYNSEIIP
ATLQWTTDSGNILKETMTVTFAEGNSPGESITTKVETNQTRGSLSPEPTHLLSSLSSFQPKIFTQLQGLQ
LQPRYTSPDESPAVVSVNNQPSSSPSGLLDTIGSAVMNNNSLLLGQSHSLQRDTCLTQNNSTASTMGNLP
EPDQNLVAMDELVEVGDVEDTGNLEGTVHRILLGDVQTIPIQIIDNHSALIEENPESTISVSQVKQEPKE
PALSMEAKKTVDYKKLSAT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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