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Report for CCDS54151.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54151.1 Public Homo sapiens 17 TUBD1 24 110 108 CCDS HistoryNCBI Gene:51174Re-query CCDS DB by CCDS ID:54151.1Re-query CCDS DB by GeneID:51174See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54151.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000539018.5 ENSP00000441757.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000539018.5Link to Ensembl Protein Viewer:ENSP00000441757.1Re-query CCDS DB by Nucleotide ID:ENST00000539018Re-query CCDS DB by Protein ID:ENSP00000441757
Original member Current member NCBI NM_001193613.2 NP_001180542.1 Accepted alive Link to Nucleotide Sequence:NM_001193613.2Link to Protein Sequence:NP_001180542.1Re-query CCDS DB by Nucleotide ID:NM_001193613Re-query CCDS DB by Protein ID:NP_001180542Link to BLAST:NP_001180542.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001180542.1 237 Q9UJT1-4 237 100% 0 0

Chromosomal Locations for CCDS 54151.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 59860322 59860424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59863664 59863847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59866609 59866749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59874539 59874703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59878103 59878223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (714 nt):
ATGAATATCAAGCAGATCTCCTTTAGTGATATCAATCAAGTCCTCGCACATCAGCTGGGAAGTGTGTTCC
AGCCTACTTATTCTGCAGAAAGCTCATTTCACTACAGACGAAATCCACTAGGAGACTTAATGGAGCATTT
AGTTCCCCATCCTGAATTCAAGATGCTGAGTGTTCGTAACATTCCTCACATGTCTGAGAATTCATTGGCA
TACACCACATTTACTTGGGCTGGCCTCCTCAAGCATTTGAGACAGATGCTCATTTCTAATGCAAAGATGG
AAGAAGGTATTGATAGGCATGTATGGCCTCCTTTATCAGGACTTCCTCCTCTTAGTAAAATGTCTCTCAA
CAAGGACCTGCATTTTAACACTTCCATTGCTAACTTGGTCATTCTTCGTGGGAAAGATGTGCAAAGTGCA
GATGTGGAGGGATTTAAAGATCCAGCTCTGTATACTTCCTGGTTGAAGCCTGTTAATGCTTTCAACGTGT
GGAAAACCCAGCGGGCCTTTAGCAAATATGAGAAGTCTGCAGTGTTGGTCAGCAACAGCCAGTTCTTAGT
AAAACCACTTGATATGATTGTTGGGAAGGCATGGAATATGTTTGCTTCAAAAGCCTACATTCATCAGTAC
ACAAAATTTGGAATCGAAGAAGAGGACTTTTTAGACAGTTTCACGTCATTAGAGCAGGTTGTTGCCAGTT
ACTGTAATCTCTGA

Translation (237 aa):
MNIKQISFSDINQVLAHQLGSVFQPTYSAESSFHYRRNPLGDLMEHLVPHPEFKMLSVRNIPHMSENSLA
YTTFTWAGLLKHLRQMLISNAKMEEGIDRHVWPPLSGLPPLSKMSLNKDLHFNTSIANLVILRGKDVQSA
DVEGFKDPALYTSWLKPVNAFNVWKTQRAFSKYEKSAVLVSNSQFLVKPLDMIVGKAWNMFASKAYIHQY
TKFGIEEEDFLDSFTSLEQVVASYCNL


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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