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Report for CCDS14477.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14477.1 Public Homo sapiens X TRMT2B 24 110 108 CCDS HistoryNCBI Gene:79979Re-query CCDS DB by CCDS ID:14477.1Re-query CCDS DB by GeneID:79979See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14477.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372935.5 ENSP00000362026.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000372935.5Link to Ensembl Protein Viewer:ENSP00000362026.1Re-query CCDS DB by Nucleotide ID:ENST00000372935Re-query CCDS DB by Protein ID:ENSP00000362026
Original member Current member EBI ENST00000372936.4 ENSP00000362027.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000372936.4Link to Ensembl Protein Viewer:ENSP00000362027.3Re-query CCDS DB by Nucleotide ID:ENST00000372936Re-query CCDS DB by Protein ID:ENSP00000362027
Original member Current member EBI ENST00000545398.5 ENSP00000438134.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000545398.5Link to Ensembl Protein Viewer:ENSP00000438134.1Re-query CCDS DB by Nucleotide ID:ENST00000545398Re-query CCDS DB by Protein ID:ENSP00000438134
Original member Current member NCBI NM_001167970.2 NP_001161442.1 Accepted alive Link to Nucleotide Sequence:NM_001167970.2Link to Protein Sequence:NP_001161442.1Re-query CCDS DB by Nucleotide ID:NM_001167970Re-query CCDS DB by Protein ID:NP_001161442Link to BLAST:NP_001161442.1
Original member Current member NCBI NM_001167972.2 NP_001161444.1 Accepted alive Link to Nucleotide Sequence:NM_001167972.2Link to Protein Sequence:NP_001161444.1Re-query CCDS DB by Nucleotide ID:NM_001167972Re-query CCDS DB by Protein ID:NP_001161444Link to BLAST:NP_001161444.1
Original member Current member NCBI NM_024917.6 NP_079193.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024917.6Link to Protein Sequence:NP_079193.2Re-query CCDS DB by Nucleotide ID:NM_024917Re-query CCDS DB by Protein ID:NP_079193Link to BLAST:NP_079193.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161442.1 504 Q96GJ1-1 504 100% 0 0
NP_001161444.1 504 Q96GJ1-1 504 100% 0 0
NP_079193.2 504 Q96GJ1-1 504 100% 0 0

Chromosomal Locations for CCDS 14477.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 101010581 101010707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101018971 101019070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101019284 101019403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101020487 101020588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101021101 101021315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101021968 101022062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101023470 101023616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101035613 101035683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101036974 101037073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101037917 101038051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101041317 101041371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 101042042 101042289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1515 nt):
ATGGCAGGCCTTAAGAGAAGAGTCCCACTGCACAGCCTCAGATACTTCATCTCCATGGTGGGTCTCTTCT
CCAAACCAGGACTGCTTCCCTGGTATGCCAGAAATCCACCAGGATGGTCACAGCTCTTTCTGGGCACAGT
ATGTAAGGGAGATTTCACCCGTGTGATAGCCACGAAATGTCAGAAAGGACAAAAAAGTCAGAAGAAACCA
AGCCATCTTGGACCACTAGATGGTTCCTGGCAGGAAAGGCTGGCTGATGTTGTGACACCACTCTGGAGGT
TGAGCTATGAAGAACAGCTCAAGGTGAAATTTGCAGCTCAGAAGAAAATTTTACAAAGACTAGAGTCTTA
CATCCAAATGCTCAATGGAGTCAGTGTGACAACGGCTGTACCCAAATCTGAGAGGCTCTCTTGTCTTCTC
CATCCTATTATACCCTCTCCTGTCATCAATGGTTACCGAAATAAGTCCACCTTCTCTGTGAACCGAGGTC
CAGATGGCAATCCAAAGACTGTGGGGTTCTACCTGGGAACTTGGAGAGATGGGAACGTTGTCTGTGTGCA
GTCTAATCATCTGAAAAACATCCCTGAGAAACACAGTCAAGTGGCGCAGTACTATGAAGTATTCCTTCGA
CAGTCTCCATTGGAGCCCTGCCTTGTATTTCATGAAGGTGGATACTGGCGTGAGCTCACAGTCCGCACCA
ATAGCCAAGGGCACACAATGGCTATCATCACTTTCCATCCCCAGAAATTAAGTCAGGAGGAGCTCCATGT
TCAGAAGGAGATTGTAAAGGAATTTTTCATCAGAGGTCCTGGAGCAGCCTGTGGCTTGACCTCACTTTAC
TTCCAGGAAAGTACCATGACCCGTTGCAGCCATCAGCAGTCTCCCTATCAGCTTCTGTTTGGGGAACCCT
ACATCTTTGAAGAACTTCTGAGCTTGAAGATCCGCATCTCTCCAGATGCCTTTTTCCAGATTAACACAGC
TGGTGCAGAGATGCTGTATCGGACTGTGGGGGAGCTGACTGGAGTGAACTCTGACACCATCCTTCTTGAC
ATCTGCTGTGGAACTGGTGTGATTGGCCTCTCTCTGGCTCAGCATACATCTCGGGTCCTTGGGATTGAAT
TGTTGGAGCAGGCAGTGGAGGATGCAAGATGGACTGCAGCCTTCAATGGCATCACCAACTCTGAATTTCA
TACTGGTCAAGCAGAGAAGATTTTGCCAGGGCTGCTAAAGTCAAAGGAAGATGGACAGTCAATTGTTGCT
GTGGTGAACCCAGCCCGTGCCGGACTGCATTACAAGGTGATTCAAGCCATTCGAAACTTCAGGGCCATCC
ACACGCTAGTTTTTGTTTCCTGCAAGCTCCATGGTGAATCCACTAGGAATGTCATTGAGCTGTGCTGTCC
TCCAGACCCTGCTAAGAAGCTCTTAGGCGAGCCCTTTGTCCTGCAGCAAGCTGTACCTGTGGATTTGTTC
CCTCACACCCCACATTGTGAGCTGGTGCTCCTCTTTACTCGATAA

Translation (504 aa):
MAGLKRRVPLHSLRYFISMVGLFSKPGLLPWYARNPPGWSQLFLGTVCKGDFTRVIATKCQKGQKSQKKP
SHLGPLDGSWQERLADVVTPLWRLSYEEQLKVKFAAQKKILQRLESYIQMLNGVSVTTAVPKSERLSCLL
HPIIPSPVINGYRNKSTFSVNRGPDGNPKTVGFYLGTWRDGNVVCVQSNHLKNIPEKHSQVAQYYEVFLR
QSPLEPCLVFHEGGYWRELTVRTNSQGHTMAIITFHPQKLSQEELHVQKEIVKEFFIRGPGAACGLTSLY
FQESTMTRCSHQQSPYQLLFGEPYIFEELLSLKIRISPDAFFQINTAGAEMLYRTVGELTGVNSDTILLD
ICCGTGVIGLSLAQHTSRVLGIELLEQAVEDARWTAAFNGITNSEFHTGQAEKILPGLLKSKEDGQSIVA
VVNPARAGLHYKVIQAIRNFRAIHTLVFVSCKLHGESTRNVIELCCPPDPAKKLLGEPFVLQQAVPVDLF
PHTPHCELVLLFTR


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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