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Report for CCDS12373.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12373.1 Public Homo sapiens 19 PDE4C 24 110 108 CCDS HistoryNCBI Gene:5143Re-query CCDS DB by CCDS ID:12373.1Re-query CCDS DB by GeneID:5143See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12373.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000355502.7 ENSP00000347689.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000355502.7Link to Ensembl Protein Viewer:ENSP00000347689.2Re-query CCDS DB by Nucleotide ID:ENST00000355502Re-query CCDS DB by Protein ID:ENSP00000347689
Original member Current member EBI ENST00000594617.7 ENSP00000469696.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000594617.7Link to Ensembl Protein Viewer:ENSP00000469696.1Re-query CCDS DB by Nucleotide ID:ENST00000594617Re-query CCDS DB by Protein ID:ENSP00000469696
Original member Current member EBI ENST00000594465.7 ENSP00000470210.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000594465.7Link to Ensembl Protein Viewer:ENSP00000470210.1Re-query CCDS DB by Nucleotide ID:ENST00000594465Re-query CCDS DB by Protein ID:ENSP00000470210
Original member Current member NCBI NM_000923.6 NP_000914.2 Accepted alive Link to Nucleotide Sequence:NM_000923.6Link to Protein Sequence:NP_000914.2Re-query CCDS DB by Nucleotide ID:NM_000923Re-query CCDS DB by Protein ID:NP_000914Link to BLAST:NP_000914.2
Original member Current member NCBI NM_001330172.2 NP_001317101.1 Accepted alive Link to Nucleotide Sequence:NM_001330172.2Link to Protein Sequence:NP_001317101.1Re-query CCDS DB by Nucleotide ID:NM_001330172Re-query CCDS DB by Protein ID:NP_001317101Link to BLAST:NP_001317101.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000914.2 712 Q08493-1 712 100% 0 0
NP_001317101.1 712 Q08493-1 712 100% 0 0

Chromosomal Locations for CCDS 12373.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 18210929 18211276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18211759 18211941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18213368 18213490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18216741 18216895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18218149 18218248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18218334 18218498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18218940 18219038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18219234 18219397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18220226 18220319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18220403 18220515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18220874 18220923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18221105 18221178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18221261 18221297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18222132 18222323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18232950 18233191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2139 nt):
ATGGAGAACCTGGGGGTCGGCGAAGGGGCAGAGGCTTGCAGCAGGTTGAGTCGCTCTCGCGGCCGCCACA
GCATGACCAGAGCCCCGAAGCACCTGTGGCGGCAACCCCGGCGCCCCATCCGCATCCAACAGCGCTTCTA
TTCGGATCCGGACAAGTCCGCGGGCTGCCGCGAGAGGGACCTGAGCCCGCGGCCGGAGCTCAGGAAGTCG
CGGCTCTCCTGGCCCGTTTCCTCCTGCAGGCGCTTTGACCTGGAAAATGGGCTCTCGTGTGGGAGGAGGG
CCCTGGACCCTCAGTCCAGCCCTGGCCTGGGCCGGATTATGCAGGCTCCAGTCCCGCACAGCCAGCGGCG
CGAGTCCTTCCTGTACCGCTCAGATAGCGACTATGAACTCTCGCCCAAGGCCATGTCTCGGAACTCCTCT
GTGGCCAGCGACCTACATGGAGAGGACATGATTGTGACGCCCTTTGCCCAGGTCCTGGCCAGTCTGCGGA
CCGTTCGGAGCAACGTGGCGGCCCTTGCCCGCCAGCAATGCCTAGGAGCAGCCAAGCAGGGACCCGTCGG
AAACCCTTCATCCAGCAATCAGCTCCCTCCTGCAGAGGACACGGGGCAGAAGCTGGCATTGGAGACGCTA
GACGAGCTGGACTGGTGCCTGGATCAGTTGGAGACGCTGCAGACCCGGCACTCGGTGGGGGAGATGGCCT
CCAACAAGTTCAAGCGGATCCTGAACCGGGAGTTGACCCACCTGTCCGAAACCAGCCGCTCCGGGAACCA
GGTGTCCGAGTACATCTCCCGGACCTTCCTGGACCAGCAGACCGAGGTGGAGCTGCCCAAGGTGACCGCT
GAGGAGGCCCCACAGCCCATGTCCCGGATCAGTGGCCTACATGGGCTCTGCCACAGTGCCAGCCTCTCCT
CAGCCACTGTCCCACGCTTTGGGGTCCAGACTGACCAGGAGGAGCAACTGGCCAAGGAGCTAGAAGACAC
CAACAAGTGGGGACTTGATGTGTTCAAGGTGGCGGAGCTAAGTGGGAACCGGCCCCTCACAGCTATCATA
TTCAGCATTTTTCAGGAGCGGGACCTGCTGAAGACATTCCAGATCCCAGCAGACACACTGGCCACCTACC
TGCTGATGCTGGAAGGTCACTACCACGCCAATGTGGCCTACCACAACAGCCTACATGCCGCCGACGTGGC
CCAGTCCACGCATGTGCTGCTGGCTACGCCCGCCCTCGAGGCTGTGTTCACAGACTTGGAAATCCTGGCT
GCCCTCTTTGCAAGCGCCATCCACGACGTGGACCATCCTGGGGTCTCCAACCAGTTTCTGATTAACACCA
ACTCAGAGCTGGCGCTTATGTACAACGACGCCTCGGTGCTGGAGAACCATCACCTGGCTGTGGGCTTCAA
GCTGCTGCAGGCAGAGAACTGCGATATCTTCCAGAACCTCAGCGCCAAGCAGCGACTGAGTCTGCGCAGG
ATGGTCATTGACATGGTGCTGGCCACAGACATGTCCAAACACATGAACCTCCTGGCCGACCTCAAGACCA
TGGTGGAGACCAAGAAGGTGACAAGCCTCGGTGTCCTCCTCCTGGACAACTATTCCGACCGAATCCAGGT
CTTGCAGAACCTGGTGCACTGTGCTGATCTGAGCAACCCCACCAAGCCGCTGCCCCTGTACCGCCAGTGG
ACGGACCGCATCATGGCCGAGTTCTTCCAGCAGGGAGACCGCGAGCGTGAGTCGGGCCTGGACATCAGTC
CCATGTGTGACAAGCATACGGCCTCAGTGGAGAAGTCCCAGGTGGGTTTCATTGACTACATTGCTCACCC
ACTGTGGGAGACTTGGGCTGACCTGGTCCACCCAGATGCACAGGACCTGCTGGACACGCTGGAGGACAAT
CGAGAGTGGTACCAGAGCAAGATCCCCCGAAGTCCCTCAGACCTCACCAACCCCGAGCGGGACGGGCCTG
ACAGATTCCAGTTTGAACTGACTCTGGAGGAGGCAGAGGAAGAGGATGAGGAGGAAGAAGAGGAGGGGGA
AGAGACAGCTTTAGCCAAAGAGGCCTTGGAGTTGCCTGACACTGAACTCCTGTCCCCTGAAGCCGGCCCA
GACCCTGGGGACTTACCCCTCGACAACCAGAGGACTTAG

Translation (712 aa):
MENLGVGEGAEACSRLSRSRGRHSMTRAPKHLWRQPRRPIRIQQRFYSDPDKSAGCRERDLSPRPELRKS
RLSWPVSSCRRFDLENGLSCGRRALDPQSSPGLGRIMQAPVPHSQRRESFLYRSDSDYELSPKAMSRNSS
VASDLHGEDMIVTPFAQVLASLRTVRSNVAALARQQCLGAAKQGPVGNPSSSNQLPPAEDTGQKLALETL
DELDWCLDQLETLQTRHSVGEMASNKFKRILNRELTHLSETSRSGNQVSEYISRTFLDQQTEVELPKVTA
EEAPQPMSRISGLHGLCHSASLSSATVPRFGVQTDQEEQLAKELEDTNKWGLDVFKVAELSGNRPLTAII
FSIFQERDLLKTFQIPADTLATYLLMLEGHYHANVAYHNSLHAADVAQSTHVLLATPALEAVFTDLEILA
ALFASAIHDVDHPGVSNQFLINTNSELALMYNDASVLENHHLAVGFKLLQAENCDIFQNLSAKQRLSLRR
MVIDMVLATDMSKHMNLLADLKTMVETKKVTSLGVLLLDNYSDRIQVLQNLVHCADLSNPTKPLPLYRQW
TDRIMAEFFQQGDRERESGLDISPMCDKHTASVEKSQVGFIDYIAHPLWETWADLVHPDAQDLLDTLEDN
REWYQSKIPRSPSDLTNPERDGPDRFQFELTLEEAEEEDEEEEEEGEETALAKEALELPDTELLSPEAGP
DPGDLPLDNQRT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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