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Report for CCDS30773.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30773.1 Public Homo sapiens 1 GFI1 24 110 108 CCDS HistoryNCBI Gene:2672Re-query CCDS DB by CCDS ID:30773.1Re-query CCDS DB by GeneID:2672See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30773.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000294702.6 ENSP00000294702.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000294702.6Link to Ensembl Protein Viewer:ENSP00000294702.5Re-query CCDS DB by Nucleotide ID:ENST00000294702Re-query CCDS DB by Protein ID:ENSP00000294702
Original member Current member EBI ENST00000370332.5 ENSP00000359357.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000370332.5Link to Ensembl Protein Viewer:ENSP00000359357.1Re-query CCDS DB by Nucleotide ID:ENST00000370332Re-query CCDS DB by Protein ID:ENSP00000359357
Original member Current member EBI ENST00000427103.6 ENSP00000399719.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000427103.6Link to Ensembl Protein Viewer:ENSP00000399719.1Re-query CCDS DB by Nucleotide ID:ENST00000427103Re-query CCDS DB by Protein ID:ENSP00000399719
Original member Current member NCBI NM_001127215.3 NP_001120687.1 Accepted alive Link to Nucleotide Sequence:NM_001127215.3Link to Protein Sequence:NP_001120687.1Re-query CCDS DB by Nucleotide ID:NM_001127215Re-query CCDS DB by Protein ID:NP_001120687Link to BLAST:NP_001120687.1
Original member Current member NCBI NM_001127216.3 NP_001120688.1 Accepted alive Link to Nucleotide Sequence:NM_001127216.3Link to Protein Sequence:NP_001120688.1Re-query CCDS DB by Nucleotide ID:NM_001127216Re-query CCDS DB by Protein ID:NP_001120688Link to BLAST:NP_001120688.1
Original member Current member NCBI NM_005263.5 NP_005254.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005263.5Link to Protein Sequence:NP_005254.2Re-query CCDS DB by Nucleotide ID:NM_005263Re-query CCDS DB by Protein ID:NP_005254Link to BLAST:NP_005254.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001120687.1 422 Q99684 422 100% 0 0
NP_001120688.1 422 Q99684 422 100% 0 0
NP_005254.2 422 Q99684 422 100% 0 0

Chromosomal Locations for CCDS 30773.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 92476029 92476207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 92478588 92478753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 92480348 92480485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 92480601 92481088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 92482864 92483046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 92483373 92483487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1269 nt):
ATGCCGCGCTCATTTCTCGTCAAAAGCAAGAAGGCTCACAGCTACCACCAGCCGCGCTCCCCAGGACCAG
ACTATTCCCTCCGTTTAGAGAATGTACCGGCGCCTAGCCGAGCAGACAGCACTTCAAATGCAGGCGGGGC
GAAGGCGGAGCCCCGGGACCGTTTGTCCCCCGAATCGCAGCTGACCGAAGCCCCAGACAGAGCCTCCGCA
TCCCCAGACAGCTGCGAAGGCAGCGTCTGCGAACGGAGCTCGGAGTTTGAGGACTTCTGGAGGCCCCCGT
CACCCTCCGCGTCTCCAGCCTCGGAGAAGTCAATGTGCCCATCGCTGGACGAAGCCCAGCCCTTCCCCCT
GCCTTTCAAACCGTACTCATGGAGCGGCCTGGCGGGTTCTGACCTGCGGCACCTGGTGCAGAGCTACCGA
CCGTGTGGGGCCCTGGAGCGTGGCGCTGGCCTGGGCCTCTTCTGCGAACCCGCCCCGGAGCCTGGCCACC
CGGCCGCGCTGTACGGCCCGAAGCGGGCTGCCGGCGGCGCGGGGGCCGGGGCGCCAGGGAGCTGCAGCGC
AGGGGCCGGTGCCACCGCTGGCCCTGGCCTAGGGCTCTACGGCGACTTCGGGTCTGCGGCAGCCGGGCTG
TATGAGAGGCCCACGGCAGCGGCGGGCTTGCTGTACCCCGAGCGTGGCCACGGGCTGCACGCAGACAAGG
GCGCTGGCGTCAAGGTGGAGTCGGAGCTGCTGTGCACCCGCCTGCTGCTGGGCGGCGGCTCCTACAAGTG
CATCAAGTGCAGCAAGGTGTTCTCCACGCCGCACGGGCTCGAGGTGCACGTGCGCAGGTCCCACAGCGGT
ACCAGACCCTTTGCCTGCGAGATGTGCGGCAAGACCTTCGGGCACGCGGTGAGCCTGGAGCAGCACAAAG
CCGTGCACTCGCAGGAACGGAGCTTTGACTGTAAGATCTGTGGGAAGAGCTTCAAGAGGTCATCCACACT
GTCCACACACCTGCTTATCCACTCAGACACTCGGCCCTACCCCTGTCAGTACTGTGGCAAGAGGTTCCAC
CAGAAGTCAGACATGAAGAAACACACTTTCATCCACACTGGTGAGAAGCCTCACAAGTGCCAGGTGTGCG
GCAAGGCATTCAGCCAGAGCTCCAACCTCATCACCCACAGCCGCAAACACACAGGCTTCAAGCCCTTCGG
CTGCGACCTCTGTGGGAAGGGTTTCCAGAGGAAGGTGGACCTCCGAAGGCACCGGGAGACGCAGCATGGG
CTCAAATGA

Translation (422 aa):
MPRSFLVKSKKAHSYHQPRSPGPDYSLRLENVPAPSRADSTSNAGGAKAEPRDRLSPESQLTEAPDRASA
SPDSCEGSVCERSSEFEDFWRPPSPSASPASEKSMCPSLDEAQPFPLPFKPYSWSGLAGSDLRHLVQSYR
PCGALERGAGLGLFCEPAPEPGHPAALYGPKRAAGGAGAGAPGSCSAGAGATAGPGLGLYGDFGSAAAGL
YERPTAAAGLLYPERGHGLHADKGAGVKVESELLCTRLLLGGGSYKCIKCSKVFSTPHGLEVHVRRSHSG
TRPFACEMCGKTFGHAVSLEQHKAVHSQERSFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFH
QKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFGCDLCGKGFQRKVDLRRHRETQHG
LK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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