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Report for CCDS274.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
274.1 Public Homo sapiens 1 PDIK1L 24 110 108 CCDS HistoryNCBI Gene:149420Re-query CCDS DB by CCDS ID:274.1Re-query CCDS DB by GeneID:149420See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 274.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374269.2 ENSP00000363387.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000374269.2Link to Ensembl Protein Viewer:ENSP00000363387.1Re-query CCDS DB by Nucleotide ID:ENST00000374269Re-query CCDS DB by Protein ID:ENSP00000363387
Original member Current member EBI ENST00000374271.8 ENSP00000363389.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000374271.8Link to Ensembl Protein Viewer:ENSP00000363389.4Re-query CCDS DB by Nucleotide ID:ENST00000374271Re-query CCDS DB by Protein ID:ENSP00000363389
Original member Current member EBI ENST00000619836.4 ENSP00000480635.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000619836.4Link to Ensembl Protein Viewer:ENSP00000480635.1Re-query CCDS DB by Nucleotide ID:ENST00000619836Re-query CCDS DB by Protein ID:ENSP00000480635
Original member Current member NCBI NM_001243532.2 NP_001230461.1 Accepted alive Link to Nucleotide Sequence:NM_001243532.2Link to Protein Sequence:NP_001230461.1Re-query CCDS DB by Nucleotide ID:NM_001243532Re-query CCDS DB by Protein ID:NP_001230461Link to BLAST:NP_001230461.1
Original member Current member NCBI NM_001243533.2 NP_001230462.1 Accepted alive Link to Nucleotide Sequence:NM_001243533.2Link to Protein Sequence:NP_001230462.1Re-query CCDS DB by Nucleotide ID:NM_001243533Re-query CCDS DB by Protein ID:NP_001230462Link to BLAST:NP_001230462.1
Original member Current member NCBI NM_152835.5 NP_690048.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152835.5Link to Protein Sequence:NP_690048.1Re-query CCDS DB by Nucleotide ID:NM_152835Re-query CCDS DB by Protein ID:NP_690048Link to BLAST:NP_690048.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001230461.1 341 Q8N165 341 100% 0 0
NP_001230462.1 341 Q8N165 341 100% 0 0
NP_690048.1 341 Q8N165 341 100% 0 0

Chromosomal Locations for CCDS 274.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 26114309 26114593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26121837 26122577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1026 nt):
ATGGTGAGTAGCCAGCCAAAGTACGATCTAATACGGGAGGTAGGCCGAGGTAGTTACGGTGTTGTGTATG
AAGCAGTCATCAGAAAGACCTCTGCACGGGTGGCAGTGAAGAAAATTCGATGTCACGCACCTGAAAATGT
TGAACTAGCCCTTCGTGAGTTCTGGGCACTAAGCAGTATCAAGAGCCAACATCCAAATGTGATTCACTTG
GAGGAATGCATCCTACAAAAGGATGGGATGGTGCAAAAGATGTCCCACGGCTCTAATTCTTCCCTTTATT
TACAGCTTGTAGAAACTTCATTAAAAGGAGAAATTGCCTTTGATCCCAGAAGCGCCTATTATTTGTGGTT
TGTGATGGATTTTTGTGACGGAGGAGATATGAATGAGTATCTGTTGTCCAGGAAACCCAATCGTAAAACT
AACACCAGCTTCATGCTTCAGCTGAGCAGTGCCCTGGCTTTCTTGCATAAAAACCAGATCATCCACCGAG
ATCTTAAGCCTGATAACATCCTGATTTCTCAAACCAGGTTGGATACCAGTGACTTGGAACCTACCCTCAA
AGTGGCTGATTTTGGTCTAAGTAAAGTTTGTTCAGCCTCTGGGCAGAACCCAGAAGAACCTGTCAGTGTA
AACAAGTGTTTCCTTTCCACAGCATGTGGAACAGATTTTTACATGGCTCCTGAAGTTTGGGAAGGACATT
ACACAGCAAAAGCTGACATCTTTGCTCTGGGGATTATCATCTGGGCAATGCTGGAAAGGATCACATTCAT
AGACACAGAGACAAAGAAGGAACTCTTGGGGAGTTATGTAAAACAAGGAACTGAGATTGTGCCTGTTGGG
GAGGCACTTCTGGAAAATCCCAAAATGGAACTTCTCATTCCTGTGAAGAAAAAATCTATGAATGGGCGAA
TGAAACAACTGATTAAGGAAATGCTGGCTGCAAACCCTCAGGATCGTCCAGATGCTTTTGAACTAGAACT
CAGATTAGTACAAATTGCATTTAAAGATAGCAGCTGGGAAACGTGA

Translation (341 aa):
MVSSQPKYDLIREVGRGSYGVVYEAVIRKTSARVAVKKIRCHAPENVELALREFWALSSIKSQHPNVIHL
EECILQKDGMVQKMSHGSNSSLYLQLVETSLKGEIAFDPRSAYYLWFVMDFCDGGDMNEYLLSRKPNRKT
NTSFMLQLSSALAFLHKNQIIHRDLKPDNILISQTRLDTSDLEPTLKVADFGLSKVCSASGQNPEEPVSV
NKCFLSTACGTDFYMAPEVWEGHYTAKADIFALGIIIWAMLERITFIDTETKKELLGSYVKQGTEIVPVG
EALLENPKMELLIPVKKKSMNGRMKQLIKEMLAANPQDRPDAFELELRLVQIAFKDSSWET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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