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Report for CCDS75333.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75333.1 Public Homo sapiens 5 PCDHGA5 24 110 108 CCDS HistoryNCBI Gene:56110Re-query CCDS DB by CCDS ID:75333.1Re-query CCDS DB by GeneID:56110See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75333.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000611914.1 ENSP00000480337.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000611914.1Link to Ensembl Protein Viewer:ENSP00000480337.1Re-query CCDS DB by Nucleotide ID:ENST00000611914Re-query CCDS DB by Protein ID:ENSP00000480337
Original member Current member NCBI NM_032054.2 NP_114443.1 Accepted alive Link to Nucleotide Sequence:NM_032054.2Link to Protein Sequence:NP_114443.1Re-query CCDS DB by Nucleotide ID:NM_032054Re-query CCDS DB by Protein ID:NP_114443Link to BLAST:NP_114443.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_114443.1 813 Q9Y5G8-2 813 100% 0 0

Chromosomal Locations for CCDS 75333.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 141364331 141366772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2442 nt):
ATGGCGAGTCCACCTAGGGGCTGGGGCTGCGGAGAGCTGCTGCTGCCCTTCATGCTCCTGGGGACGCTGT
GCGAGCCAGGATCCGGGCAGATCCGCTACTCGATGCCGGAGGAGCTGGACAAAGGCTCCTTCGTCGGCAA
CATAGCCAAGGACCTTGGGCTGGAGCCCCAGGAGCTGGCGGAGCGCGGAGTCCGCATCGTCTCCAGAGGT
AGGACGCAGCTTTTTGCCCTGAACCCGCGAAGCGGCAGCTTGGTCACCGCGGGCAGGATAGACCGGGAGG
AGCTCTGCGCTCAGAGCCCACTGTGTGTGGTGAACTTTAACATCTTGGTTGAGAACAAAATGAAAATTTA
TGGAGTAGAAGTAGAAATAATCGATATTAATGATAACTTCCCGCGTTTCCGGGATGAAGAGTTAAAAGTA
AAAGTTAATGAAAATGCGGCTGCAGGGACACGGTTAGTGCTTCCCTTCGCGCGGGATGCGGATGTGGGTG
TGAACTCTCTCCGGAGTTACCAGCTCAGCTCCAATCTGCACTTCTCTCTGGATGTGGTAAGCGGAACTGA
TGGACAAAAGTATCCGGAGCTGGTGTTGGAACAGCCCCTAGACCGCGAGAAAGAGACTGTTCACGACCTC
CTCCTCACAGCTTTAGATGGCGGAGACCCGGTACTCTCCGGCACCACGCACATCCGTGTTACGGTCCTCG
ACGCAAACGACAATGCGCCCCTGTTCACCCCATCCGAGTACAGCGTGAGTGTTCCAGAGAACATACCTGT
GGGCACTCGGCTGCTCATGCTAACCGCCACGGATCCAGATGAGGGAATAAACGGGAAATTGACCTACTCT
TTTCGCAATGAAGAAGAAAAAATTTCGGAGACTTTCCAACTTGATTCCAACCTGGGGGAAATCTCAACTC
TACAATCACTGGACTATGAAGAATCCAGATTCTACCTCATGGAAGTGGTAGCTCAGGATGGAGGCGCTCT
TGTTGCCAGCGCTAAGGTGGTGGTCACAGTACAGGACGTGAATGACAATGCCCCCGAAGTGATCCTCACC
TCTCTGACCAGTTCGATCTCTGAAGACTGTCTTCCCGGAACTGTAATCGCGCTGTTTAGCGTACATGATG
GTGATTCTGGAGAAAATGGTGAGATTGCATGCTCTATTCCTAGGAATTTGCCTTTTAAATTGGAGAAGTC
AGTTGATAATTACTATCACCTATTAACAACTAGGGACCTGGACAGAGAAGAGACTTCAGATTATAATATC
ACTTTAACCGTCATGGACCATGGAACCCCGCCCCTCTCTACAGAAAGCCACATCCCCTTGAAAGTAGCAG
ACGTTAATGACAACCCACCCAATTTCCCTCAAGCCTCCTACTCCACCTCTGTCACAGAAAACAATCCCAG
AGGTGTCTCTATCTTCTCTGTGACAGCCCATGACCCCGACAGCGGCGACAACGCTCGAGTCACCTACTCC
CTGGCTGAAGACACATTTCAGGGGGCGCCCTTGTCCTCCTATGTATCCATTAACTCTGACACCGGTGTCC
TGTATGCTCTGAGATCCTTCGACTATGAGCAGTTGAGAGACCTACAGTTGTGGGTGACAGCCAGCGACAG
TGGGAACCCTCCACTTAGCAGCAACGTGTCGCTGAGCCTGTTTGTGCTGGACCAGAACGACAATACGCCT
GAGATCCTGTACCCCGCCCTCCCCACAGACGGTTCCACGGGCGTGGAGCTGGCGCCTCGCTCCGCAGAAC
CTGGCTACCTGGTGACCAAGGTGGTAGCGGTGGACAAAGATTCAGGCCAGAACGCCTGGCTGTCCTACCG
CCTGCTTAAGGCCAGCGAGCCAGGACTCTTTGCGGTTGGGCTGCACACGGGCGAGGTGCGCACAGCGCGA
GCCCTGCTGGACAGAGACGCGCTCAAGCAGAGCCTCGTGGTGGCCGTCGAAGACCATGGCCAGCCCCCTC
TGTCAGCCACCTTCACGGTCACCGTTGCCGTGGCCGACAGGATCCCTGACATCCTGGCTGACCTAGGCAG
TATCAAGACCCCCATTGACCCTGAGGATCTGGACCTCACACTCTATCTTGTGGTGGCAGTGGCTGCAGTC
TCCTGCGTCTTCCTGGCCTTCGTCATCGTGCTGCTGGTGCTCAGACTGAGGCGCTGGCACAAGTCACGCC
TGCTTCAGGCTGAAGGCAGCAGGTTGGCGGGTGTGCCCGCCTCGCACTTTGTGGGCGTGGATGGGGTTCG
GGCTTTCCTGCAGACCTATTCCCACGAGGTCTCCCTCACCGCGGACTCGAGGAAGAGTCACCTGATCTTT
CCCCAGCCCAACTACGCAGACACGCTCCTTAGTGAAGAGAGCTGTGAGAAAAGCGAGCCTCTTCTGATGT
CTGATAAGGTAGATGCAAACAAAGAAGAACGGCGAGTTCAGGTTAGTTTTCTCTTTCGGTAA

Translation (813 aa):
MASPPRGWGCGELLLPFMLLGTLCEPGSGQIRYSMPEELDKGSFVGNIAKDLGLEPQELAERGVRIVSRG
RTQLFALNPRSGSLVTAGRIDREELCAQSPLCVVNFNILVENKMKIYGVEVEIIDINDNFPRFRDEELKV
KVNENAAAGTRLVLPFARDADVGVNSLRSYQLSSNLHFSLDVVSGTDGQKYPELVLEQPLDREKETVHDL
LLTALDGGDPVLSGTTHIRVTVLDANDNAPLFTPSEYSVSVPENIPVGTRLLMLTATDPDEGINGKLTYS
FRNEEEKISETFQLDSNLGEISTLQSLDYEESRFYLMEVVAQDGGALVASAKVVVTVQDVNDNAPEVILT
SLTSSISEDCLPGTVIALFSVHDGDSGENGEIACSIPRNLPFKLEKSVDNYYHLLTTRDLDREETSDYNI
TLTVMDHGTPPLSTESHIPLKVADVNDNPPNFPQASYSTSVTENNPRGVSIFSVTAHDPDSGDNARVTYS
LAEDTFQGAPLSSYVSINSDTGVLYALRSFDYEQLRDLQLWVTASDSGNPPLSSNVSLSLFVLDQNDNTP
EILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLLKASEPGLFAVGLHTGEVRTAR
ALLDRDALKQSLVVAVEDHGQPPLSATFTVTVAVADRIPDILADLGSIKTPIDPEDLDLTLYLVVAVAAV
SCVFLAFVIVLLVLRLRRWHKSRLLQAEGSRLAGVPASHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIF
PQPNYADTLLSEESCEKSEPLLMSDKVDANKEERRVQVSFLFR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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