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Report for CCDS792.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
792.2 Public Homo sapiens 1 GPSM2 24 110 108 CCDS HistoryNCBI Gene:29899Re-query CCDS DB by CCDS ID:792.2Re-query CCDS DB by GeneID:29899See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 792.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000264126.9 ENSP00000264126.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000264126.9Link to Ensembl Protein Viewer:ENSP00000264126.3Re-query CCDS DB by Nucleotide ID:ENST00000264126Re-query CCDS DB by Protein ID:ENSP00000264126
Original member Current member EBI ENST00000406462.6 ENSP00000385510.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000406462.6Link to Ensembl Protein Viewer:ENSP00000385510.1Re-query CCDS DB by Nucleotide ID:ENST00000406462Re-query CCDS DB by Protein ID:ENSP00000385510
Original member Current member EBI ENST00000446797.2 ENSP00000392138.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000446797.2Link to Ensembl Protein Viewer:ENSP00000392138.2Re-query CCDS DB by Nucleotide ID:ENST00000446797Re-query CCDS DB by Protein ID:ENSP00000392138
Original member Current member EBI ENST00000642355.1 ENSP00000496104.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000642355.1Link to Ensembl Protein Viewer:ENSP00000496104.1Re-query CCDS DB by Nucleotide ID:ENST00000642355Re-query CCDS DB by Protein ID:ENSP00000496104
Original member Current member EBI ENST00000645164.2 ENSP00000496756.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000645164.2Link to Ensembl Protein Viewer:ENSP00000496756.2Re-query CCDS DB by Nucleotide ID:ENST00000645164Re-query CCDS DB by Protein ID:ENSP00000496756
Original member Current member EBI ENST00000676184.1 ENSP00000502178.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000676184.1Link to Ensembl Protein Viewer:ENSP00000502178.1Re-query CCDS DB by Nucleotide ID:ENST00000676184Re-query CCDS DB by Protein ID:ENSP00000502178
Original member Current member NCBI NM_001321038.2 NP_001307967.1 Accepted alive Link to Nucleotide Sequence:NM_001321038.2Link to Protein Sequence:NP_001307967.1Re-query CCDS DB by Nucleotide ID:NM_001321038Re-query CCDS DB by Protein ID:NP_001307967Link to BLAST:NP_001307967.1
Original member Current member NCBI NM_001321039.3 NP_001307968.1 Accepted alive Link to Nucleotide Sequence:NM_001321039.3Link to Protein Sequence:NP_001307968.1Re-query CCDS DB by Nucleotide ID:NM_001321039Re-query CCDS DB by Protein ID:NP_001307968Link to BLAST:NP_001307968.1
Original member Current member NCBI NM_013296.5 NP_037428.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_013296.5Link to Protein Sequence:NP_037428.3Re-query CCDS DB by Nucleotide ID:NM_013296Re-query CCDS DB by Protein ID:NP_037428Link to BLAST:NP_037428.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001307967.1 684 P81274 684 100% 0 0
NP_001307968.1 684 P81274 684 100% 0 0
NP_037428.3 684 P81274 684 100% 0 0

Chromosomal Locations for CCDS 792.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 108885523 108885578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108896864 108897085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108897492 108897627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108897959 108898101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108898642 108898765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108898879 108898994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108901790 108901945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108903126 108903234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108904125 108904254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108914338 108914408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108918613 108918789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108922417 108922576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108924000 108924214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 108929701 108929940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2055 nt):
ATGGAGGAAAATTTGATAAGCATGAGAGAAGACCATTCTTTTCATGTTCGTTACAGAATGGAAGCTTCTT
GCCTAGAGCTGGCCTTGGAAGGGGAACGTCTATGTAAATCAGGAGACTGCCGCGCTGGCGTGTCATTCTT
TGAAGCTGCAGTTCAAGTTGGAACTGAAGACCTAAAAACACTTAGCGCTATTTACAGCCAGTTGGGCAAT
GCTTATTTCTATTTGCATGATTATGCCAAAGCATTAGAATATCACCATCATGATTTAACCCTTGCAAGGA
CTATTGGAGACCAGCTGGGGGAAGCGAAAGCTAGTGGTAATCTGGGAAACACCTTAAAAGTTCTTGGGAA
TTTTGACGAAGCCATAGTTTGTTGTCAGCGACACCTAGATATTTCCAGAGAGCTTAATGACAAGGTGGGA
GAAGCAAGAGCACTTTACAATCTTGGGAATGTGTATCATGCCAAAGGGAAAAGTTTTGGTTGCCCTGGTC
CCCAGGATGTAGGAGAATTTCCAGAAGAAGTGAGAGATGCTCTGCAGGCAGCCGTGGATTTTTATGAGGA
AAACCTATCATTAGTGACTGCTTTGGGTGACCGAGCGGCACAAGGACGTGCCTTTGGAAATCTTGGAAAC
ACACATTACCTCCTTGGCAACTTCAGGGATGCAGTTATAGCTCATGAGCAGCGTCTCCTTATTGCAAAAG
AATTTGGAGATAAAGCAGCTGAAAGAAGAGCATATAGCAACCTTGGAAATGCATATATATTTCTTGGTGA
ATTTGAAACTGCCTCGGAATACTACAAGAAGACACTACTGTTGGCCCGACAGCTTAAAGACCGAGCTGTA
GAAGCACAGTCTTGTTACAGTCTTGGAAATACATATACTTTACTTCAAGACTATGAAAAGGCCATTGATT
ATCATCTGAAGCACTTAGCAATTGCTCAAGAGCTGAATGATAGAATTGGTGAAGGAAGAGCATGTTGGAG
CTTAGGAAATGCATACACAGCACTAGGAAATCATGATCAAGCAATGCATTTTGCTGAAAAGCACTTGGAA
ATTTCAAGAGAGGTTGGGGATAAAAGTGGTGAACTAACAGCACGACTTAATCTCTCAGACCTTCAAATGG
TTCTTGGTCTGAGCTACAGCACAAATAACTCCATAATGTCTGAAAATACTGAAATTGATAGCAGTTTGAA
TGGTGTACGCCCCAAGTTGGGACGCCGGCATAGTATGGAAAATATGGAACTTATGAAGTTAACACCAGAA
AAGGTACAGAACTGGAACAGTGAAATTCTTGCTAAGCAAAAACCTCTTATTGCCAAACCTTCTGCAAAGC
TACTCTTTGTCAACAGACTGAAGGGGAAAAAATACAAAACGAATTCCTCCACTAAAGTTCTCCAAGATGC
CAGTAATTCTATTGACCACCGAATTCCAAATTCTCAGAGGAAAATCAGTGCAGATACTATTGGAGATGAA
GGGTTCTTTGACTTATTAAGCCGATTTCAAAGCAATAGGATGGATGATCAGAGATGTTGCTTACAAGAAA
AGAACTGCCATACAGCTTCAACAACAACTTCTTCCACTCCCCCTAAAATGATGCTAAAAACATCATCTGT
TCCTGTGGTATCCCCCAACACGGATGAGTTTTTAGATCTTCTTGCCAGCTCACAGAGTCGCCGTCTGGAT
GACCAGAGGGCTAGTTTCAGTAATTTGCCAGGGCTTCGTCTAACACAAAACAGCCAGTCGGTACTTAGCC
ACCTGATGACTAATGACAACAAAGAGGCTGATGAAGATTTCTTTGACATCCTTGTAAAATGTCAAGGATC
CAGATTAGATGATCAAAGATGTGCTCCACCACCTGCTACCACAAAGGGTCCGACAGTACCAGATGAAGAC
TTTTTCAGCCTTATTTTACGGTCCCAGGGAAAGAGAATGGATGAACAGAGAGTTCTTTTACAAAGAGATC
AAAACAGAGACACTGACTTTGGGCTAAAGGACTTTTTGCAAAATAATGCTTTGTTGGAGTTTAAAAATTC
AGGGAAAAAATCGGCAGACCATTAG

Translation (684 aa):
MEENLISMREDHSFHVRYRMEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGN
AYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG
EARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGN
THYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV
EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE
ISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLNGVRPKLGRRHSMENMELMKLTPE
KVQNWNSEILAKQKPLIAKPSAKLLFVNRLKGKKYKTNSSTKVLQDASNSIDHRIPNSQRKISADTIGDE
GFFDLLSRFQSNRMDDQRCCLQEKNCHTASTTTSSTPPKMMLKTSSVPVVSPNTDEFLDLLASSQSRRLD
DQRASFSNLPGLRLTQNSQSVLSHLMTNDNKEADEDFFDILVKCQGSRLDDQRCAPPPATTKGPTVPDED
FFSLILRSQGKRMDEQRVLLQRDQNRDTDFGLKDFLQNNALLEFKNSGKKSADH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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