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Report for CCDS63608.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
63608.1 Public Homo sapiens 3 LZTFL1 24 110 108 CCDS HistoryNCBI Gene:54585Re-query CCDS DB by CCDS ID:63608.1Re-query CCDS DB by GeneID:54585See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 63608.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000684620.1 ENSP00000506925.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000684620.1Link to Ensembl Protein Viewer:ENSP00000506925.1Re-query CCDS DB by Nucleotide ID:ENST00000684620Re-query CCDS DB by Protein ID:ENSP00000506925
Original member Current member NCBI NM_001276378.2 NP_001263307.1 Accepted alive Link to Nucleotide Sequence:NM_001276378.2Link to Protein Sequence:NP_001263307.1Re-query CCDS DB by Nucleotide ID:NM_001276378Re-query CCDS DB by Protein ID:NP_001263307Link to BLAST:NP_001263307.1
Original member Current member NCBI NM_001386451.1 NP_001373380.1 Accepted alive Link to Nucleotide Sequence:NM_001386451.1Link to Protein Sequence:NP_001373380.1Re-query CCDS DB by Nucleotide ID:NM_001386451Re-query CCDS DB by Protein ID:NP_001373380Link to BLAST:NP_001373380.1
Current member NCBI NM_001405922.1 NP_001392851.1 Accepted alive Link to Nucleotide Sequence:NM_001405922.1Link to Protein Sequence:NP_001392851.1Re-query CCDS DB by Nucleotide ID:NM_001405922Re-query CCDS DB by Protein ID:NP_001392851Link to BLAST:NP_001392851.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001263307.1 282 Q9NQ48-2 282 100% 0 0
NP_001373380.1 282 Q9NQ48-2 282 100% 0 0
NP_001392851.1 282 Q9NQ48-2 282 100% 0 0

Chromosomal Locations for CCDS 63608.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 45826314 45826332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45827356 45827459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45828439 45828615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45830913 45830990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45831073 45831138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45833050 45833121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45834238 45834298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45835590 45835784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 45837927 45838003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (849 nt):
ATGCGTTTTGCTCGTTCAAAGAGAGGCTTGAGACTCAAAACTGTAGATTCCTGCTTCCAAGACCTCAAGG
AGAGCAGGCTGGTGGAGGACACCTTCACCATAGATGAAGTCTCTGAAGTCCTCAATGGATTACAAGCTGT
GGTTCATAGTGAGGTGGAATCTGAGCTCATCAACACTGCCTATACCAATGTGTTACTTCTGCGACAGCTG
TTTGCACAAGCTGAGAAGTGGTATCTTAAGCTACAGACAGACATCTCTGAACTTGAAAACCGAGAATTAT
TAGAACAAGTTGCAGAATTTGAAAAAGCAGAGATTACATCTTCAAACAAAAAGCCCATCTTAGATGTCAC
AAAGCCAAAACTTGCTCCACTTAATGAAGGTGGAACAGCAGAACTCCTAAACAAGGAAATTTTAAGACTT
CAAGAAGAGAATGAGAAATTGAAGTCAAGGTTGAAGACCATTGAAATACAGGCTACAAATGCACTGGATG
AAAAGTCAAAACTAGAAAAAGCACTGCAAGATTTACAGCTTGATCAAGGAAATCAAAAGGATTTTATAAA
GGCCCAAGACTTAAGTAACTTAGAAAACACTGTCGCTGCCTTAAAGAGTGAGTTTCAGAAGACACTTAAT
GACAAGACAGAAAACCAGAAGTCACTGGAGGAGAATCTGGCGACAGCCAAGCACGATCTACTCAGGGTTC
AGGAGCAGCTGCACATGGCTGAAAAGGAATTAGAAAAGAAATTTCAGCAAACAGCAGCTTATCGAAACAT
GAAAGAGATTCTTACCAAGAAGAATGACCAAATCAAAGATCTGAGGAAAAGACTGGCACAATATGAACCT
GAAGATTAA

Translation (282 aa):
MRFARSKRGLRLKTVDSCFQDLKESRLVEDTFTIDEVSEVLNGLQAVVHSEVESELINTAYTNVLLLRQL
FAQAEKWYLKLQTDISELENRELLEQVAEFEKAEITSSNKKPILDVTKPKLAPLNEGGTAELLNKEILRL
QEENEKLKSRLKTIEIQATNALDEKSKLEKALQDLQLDQGNQKDFIKAQDLSNLENTVAALKSEFQKTLN
DKTENQKSLEENLATAKHDLLRVQEQLHMAEKELEKKFQQTAAYRNMKEILTKKNDQIKDLRKRLAQYEP
ED


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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