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Report for CCDS59065.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59065.1 Public Homo sapiens 7 VPS50 24 110 108 CCDS HistoryNCBI Gene:55610Re-query CCDS DB by CCDS ID:59065.1Re-query CCDS DB by GeneID:55610See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 59065.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000544910.5 ENSP00000443104.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000544910.5Link to Ensembl Protein Viewer:ENSP00000443104.1Re-query CCDS DB by Nucleotide ID:ENST00000544910Re-query CCDS DB by Protein ID:ENSP00000443104
Original member Current member NCBI NM_001257998.2 NP_001244927.1 Accepted alive Link to Nucleotide Sequence:NM_001257998.2Link to Protein Sequence:NP_001244927.1Re-query CCDS DB by Nucleotide ID:NM_001257998Re-query CCDS DB by Protein ID:NP_001244927Link to BLAST:NP_001244927.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001244927.1 934 Q96JG6-3 934 100% 0 0

Chromosomal Locations for CCDS 59065.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 93246118 93246129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93252653 93252775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93253860 93253931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93256509 93256562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93257394 93257464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93258159 93258276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93258357 93258392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93259550 93259632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93271220 93271262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93272635 93272733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93276165 93276305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93291703 93291835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93294545 93294636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93296742 93296836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93297145 93297243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93303460 93303550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93305828 93306004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93308824 93308942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93311166 93311272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93323611 93323732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93334117 93334197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93341427 93341575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93348711 93348807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93349875 93350033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93353640 93353761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93355891 93356080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 93358317 93358436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2805 nt):
ATGTTAACTTTGGAAGAATTCAGGGAACTTCGAGAACAGCCAAGTGACCCTCAAGCTGAACAAGAGCTTA
TTAATAGTATTGAACAAGTATATTTTTCTGTGGATTCATTTGATATTGTTAAATATGAGCTGGAGAAGCT
TCCACCTGTTCTCAATTTGCAAGAATTAGAGGCGTATAGAGACAAATTGAAACAACAGCAAGCTGCAGTA
TCTAAAAAAGTGGCAGATTTAATCCTTGAAAAACAGCCTGCTTATGTAAAGGAACTTGAAAGAGTTACCT
CATTGCAGACAGGTCTTCAATTAGCTGCTGTTATCTGTACAAATGGGAGAAGACACTTGAATATTGCAAA
GGAAGGTTTTACTCAAGCTAGTTTAGGCCTTCTTGCAAATCAAAGGAAACGTCAGTTGCTGATTGGACTT
CTGAAATCTCTGAGAACTATAAAAACATTGCAAAGAACAGATGTACGGTTAAGTGAAATGCTGGAGGAGG
AAGATTATCCAGGAGCTATTCAGTTGTGCCTTGAATGTCAAAAAGCTGCCAGCACTTTTAAACATTACAG
TTGTATAAGTGAACTGAATTCAAAGCTGCAAGATACTTTGGAACAGATTGAGGAACAGCTGGACGTAGCT
CTTTCCAAAATCTGCAAGAATTTTGACATTAACCATTATACCAAGGTTCAACAAGCTTATCGACTTCTTG
GAAAAACACAGACAGCAATGGATCAACTTCATATGCACTTCACCCAAGCCATTCACAACACCGTGTTTCA
AGTTGTTCTTGGTTATGTGGAACTATGTGCAGGAAACACAGACACAAAATTCCAAAAGCTGCAATATAAG
GATCTCTGTACACATGTTACACCAGACAGCTATATTCCATGCCTTGCAGACCTGTGCAAAGCACTATGGG
AAGTTATGCTCAGCTATTATAGGACTATGGAATGGCATGAAAAGCATGACAATGAGGATACTGCTTCAGC
TTCTGAAGGGAGTAATATGATAGGTACTGAAGAAACTAATTTTGATCGTGGCTACATAAAAAAGAAATTA
GAACATGGACTTACACGAATATGGCAGGATGTTCAGCTAAAAGTAAAAACCTACTTGCTTGGAACTGATT
TGTCTATATTCAAATATGATGATTTCATCTTTGTTTTGGATATAATCAGCAGGTTGATGCAAGTTGGAGA
AGAATTTTGTGGTAGCAAGTCTGAAGTTTTACAGGAATCTATTAGAAAACAAAGTGTCAATTATTTCAAG
AATTACCATAGAACACGGCTCGATGAACTGAGAATGTTCTTAGAGAATGAGACTTGGGAACTTTGTCCTG
TTAAGTCAAATTTCAGCATCTTGCAACTTCATGAATTTAAATTCATGGAACAGTCTCGCTCCCCATCAGT
TTCACCTAGTAAACAGCCAGTCTCAACTTCTTCAAAAACAGTGACCTTGTTTGAGCAGTACTGTAGTGGT
GGGAATCCATTTGAAATTCAGGCCAACCACAAAGATGAAGAAACAGAAGATGTCTTAGCTTCTAATGGGT
ATGAATCTGATGAACAAGAAAAGAGTGCCTATCAAGAGTATGACAGTGACAGTGATGTTCCTGAGGAACT
CAAACGAGACTATGTGGATGAGCAGACAGGAGATGGTCCTGTGAAAAGTGTTTCTCGGGAAACTCTAAAA
AGCAGGAAGAAATCAGATTACAGTCTAAATAAAGTGAATGCACCTATCTTAACAAATACAACATTGAACG
TCATAAGACTTGTTGGAAAATATATGCAGATGATGAACATTCTTAAGCCAATTGCCTTTGATGTTATTCA
TTTCATGTCTCAACTATTTGATTATTACTTGTATGCAATATATACCTTTTTTGGTCGGAATGATTCATTG
GAATCAACTGGACTCGGCCTTAGTAGTAGTAGACTAAGAACAACTCTAAACAGAATACAAGAAAGCCTTA
TTGATCTAGAAGTTTCAGCTGATCCTACTGCCACACTCACAGCAGCAGAAGAAAGAAAGGAGAAGGTGCC
AAGTCCACACCTCAGTCACCTAGTGGTTTTGACATCTGGGGATACGCTGTATGGGTTGGCAGAAAGAGTG
GTAGCCACGGAATCCTTGGTATTCTTGGCTGAACAGTTTGAGTTCCTTCAGCCACATCTGGATGCTGTGA
TGCCTGCAGTCAAAAAGCCCTTTCTTCAGCAGTTCTATTCTCAGACAGTCTCAACCGCCAGTGAACTACG
GAAACCAATTTACTGGATTGTAGCTGGTAAAGCCCTTGATTATGAACAGATGCTGCTTCTCATGGCTAAT
GTGAAATGGGATGTAAAAGAAATTATGTCACAGCACAACATATATGTAGATGCACTATTAAAGGAATTTG
AGCAGTTTAACAGGAGGCTAAATGAAGTTTCTAAGAGAGTTCGCATACCCTTGCCTGTGTCTAATATACT
TTGGGAACATTGTATACGATTGGCTAATCGAACTATTGTAGAAGGATATGCCAATGTCAAGAAATGCAGT
AATGAGGGTCGTGCCCTGATGCAATTGGATTTTCAACAGTTTTTAATGAAACTTGAAAAACTAACAGATA
TTAGACCCATTCCTGATAAAGAATTTGTAGAAACTTATATTAAAGCTTATTACCTAACTGAGAATGACAT
GGAACGGTGGATCAAAGAGCACAGGGAATATTCAACGAAGCAGCTGACCAATCTGGTGAATGTTTGCCTG
GGATCCCATATCAATAAGAAAGCAAGACAAAAACTTCTAGCAGCTATAGATGATATAGACAGACCTAAAA
GATAA

Translation (934 aa):
MLTLEEFRELREQPSDPQAEQELINSIEQVYFSVDSFDIVKYELEKLPPVLNLQELEAYRDKLKQQQAAV
SKKVADLILEKQPAYVKELERVTSLQTGLQLAAVICTNGRRHLNIAKEGFTQASLGLLANQRKRQLLIGL
LKSLRTIKTLQRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
LSKICKNFDINHYTKVQQAYRLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNTDTKFQKLQYK
DLCTHVTPDSYIPCLADLCKALWEVMLSYYRTMEWHEKHDNEDTASASEGSNMIGTEETNFDRGYIKKKL
EHGLTRIWQDVQLKVKTYLLGTDLSIFKYDDFIFVLDIISRLMQVGEEFCGSKSEVLQESIRKQSVNYFK
NYHRTRLDELRMFLENETWELCPVKSNFSILQLHEFKFMEQSRSPSVSPSKQPVSTSSKTVTLFEQYCSG
GNPFEIQANHKDEETEDVLASNGYESDEQEKSAYQEYDSDSDVPEELKRDYVDEQTGDGPVKSVSRETLK
SRKKSDYSLNKVNAPILTNTTLNVIRLVGKYMQMMNILKPIAFDVIHFMSQLFDYYLYAIYTFFGRNDSL
ESTGLGLSSSRLRTTLNRIQESLIDLEVSADPTATLTAAEERKEKVPSPHLSHLVVLTSGDTLYGLAERV
VATESLVFLAEQFEFLQPHLDAVMPAVKKPFLQQFYSQTVSTASELRKPIYWIVAGKALDYEQMLLLMAN
VKWDVKEIMSQHNIYVDALLKEFEQFNRRLNEVSKRVRIPLPVSNILWEHCIRLANRTIVEGYANVKKCS
NEGRALMQLDFQQFLMKLEKLTDIRPIPDKEFVETYIKAYYLTENDMERWIKEHREYSTKQLTNLVNVCL
GSHINKKARQKLLAAIDDIDRPKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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