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Report for CCDS83102.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83102.1 Public Homo sapiens 6 BEND6 24 110 108 CCDS HistoryNCBI Gene:221336Re-query CCDS DB by CCDS ID:83102.1Re-query CCDS DB by GeneID:221336See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 83102.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370748.7 ENSP00000359784.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000370748.7Link to Ensembl Protein Viewer:ENSP00000359784.3Re-query CCDS DB by Nucleotide ID:ENST00000370748Re-query CCDS DB by Protein ID:ENSP00000359784
Original member Current member NCBI NM_001318539.2 NP_001305468.1 Accepted alive Link to Nucleotide Sequence:NM_001318539.2Link to Protein Sequence:NP_001305468.1Re-query CCDS DB by Nucleotide ID:NM_001318539Re-query CCDS DB by Protein ID:NP_001305468Link to BLAST:NP_001305468.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001305468.1 106 Q5SZJ8-2 106 100% 0 0

Chromosomal Locations for CCDS 83102.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 56981811 56981930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 56992378 56992555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 57008181 57008203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (321 nt):
ATGCAGAAGATCGTGCAGACAGATGAAATTACCAATACACAAGCTTTTAGAAAAGGAAAGAGGAAAAGAA
CAGAGACAATGGACTCAGAAAATGCAAATAGTGACATGGATAAAGGACAGAGAGACCCATATTCGGGAAA
TGCCTTTCTGCCTGGTGAAAGCTCCAGTGAGGATGAAGAGCCTTTAGCAGAATTGTCAAAGGAAGAATTG
TGCGCCAAAATAAAAAGCCTGAAAGAAAAACTAACAAACACCCGGAAAGAAAACAGCCGACTTCGACAGT
CTTTGGTCATGCTTCAAGCTTGGTCCAGAGAGCTGCCTTAG

Translation (106 aa):
MQKIVQTDEITNTQAFRKGKRKRTETMDSENANSDMDKGQRDPYSGNAFLPGESSSEDEEPLAELSKEEL
CAKIKSLKEKLTNTRKENSRLRQSLVMLQAWSRELP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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