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Report for CCDS12283.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12283.1 Public Homo sapiens 19 RTBDN 24 110 108 CCDS HistoryNCBI Gene:83546Re-query CCDS DB by CCDS ID:12283.1Re-query CCDS DB by GeneID:83546See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12283.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000322912.9 ENSP00000326253.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000322912.9Link to Ensembl Protein Viewer:ENSP00000326253.4Re-query CCDS DB by Nucleotide ID:ENST00000322912Re-query CCDS DB by Protein ID:ENSP00000326253
Original member Current member NCBI NM_031429.3 NP_113617.1 Accepted alive Link to Nucleotide Sequence:NM_031429.3Link to Protein Sequence:NP_113617.1Re-query CCDS DB by Nucleotide ID:NM_031429Re-query CCDS DB by Protein ID:NP_113617Link to BLAST:NP_113617.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_113617.1 261 Q9BSG5-2 261 100% 0 0

Chromosomal Locations for CCDS 12283.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 12825706 12825933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12826775 12826871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12828657 12828767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12828869 12828953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12829811 12829997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12834785 12834846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12835083 12835098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (786 nt):
ATGGACGAAGCCCTAGAAACGCAGCTGAAGACGAGCAGAGGACGCTTCTCGGCTACAGAATCCCTCCCCA
CCTTGGAGCTCTTATCTCAGGTGGACATGGACTGCAGGGTCCACATGCGACCCATCGGCCTGACGTGGGT
GCTGCAACTGACCTTGGCATGGATCCTGCTAGAAGCCTGTGGAGGGAGCCGCCCACTCCAAGCCAGGTCC
CAGCAACACCATGGGCTGGCAGCTGATCTGGGCAAAGGCAAGCTGCACCTGGCAGGACCTTGTTGTCCCT
CAGAGATGGACACAACAGAGACATCGGGCCCTGGAAACCATCCAGAACGCTGTGGAGTGCCGAGCCCTGA
ATGCGAATCCTTCCTGGAACACCTCCAACGTGCCCTTCGCAGTCGCTTCCGCCTGCGGCTATTGGGGGTA
CGCCAGGCACAGCCGCTCTGCGAGGAGCTCTGCCAGGCCTGGTTCGCCAACTGCGAAGATGATATCACCT
GCGGCCCGACTTGGCTCCCACTCTCAGAAAAAAGGGGCTGTGAGCCCAGCTGCCTTACCTATGGACAGAC
CTTCGCAGACGGGACGGACCTTTGTCGCTCGGCTCTGGGCCACGCCCTACCGGTGGCTGCTCCTGGAGCC
CGTCACTGCTTCAACATCTCCATCTCCGCGGTACCTCGTCCCAGACCAGGACGACGGGGCCGGGAAGCTC
CCTCCCGGCGTTCCCGCAGCCCTCGCACCTCCATCCTGGACGCTGCGGGCAGCGGGAGTGGCAGTGGAAG
CGGCAGCGGCCCCTAG

Translation (261 aa):
MDEALETQLKTSRGRFSATESLPTLELLSQVDMDCRVHMRPIGLTWVLQLTLAWILLEACGGSRPLQARS
QQHHGLAADLGKGKLHLAGPCCPSEMDTTETSGPGNHPERCGVPSPECESFLEHLQRALRSRFRLRLLGV
RQAQPLCEELCQAWFANCEDDITCGPTWLPLSEKRGCEPSCLTYGQTFADGTDLCRSALGHALPVAAPGA
RHCFNISISAVPRPRPGRRGREAPSRRSRSPRTSILDAAGSGSGSGSGSGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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