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Report for CCDS31100.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31100.1 Public Homo sapiens 1 OR2T8 24 110 108 CCDS HistoryNCBI Gene:343172Re-query CCDS DB by CCDS ID:31100.1Re-query CCDS DB by GeneID:343172See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31100.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000641945.2 ENSP00000493286.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000641945.2Link to Ensembl Protein Viewer:ENSP00000493286.1Re-query CCDS DB by Nucleotide ID:ENST00000641945Re-query CCDS DB by Protein ID:ENSP00000493286
Original member Current member NCBI NM_001005522.2 NP_001005522.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001005522.2Link to Protein Sequence:NP_001005522.1Re-query CCDS DB by Nucleotide ID:NM_001005522Re-query CCDS DB by Protein ID:NP_001005522Link to BLAST:NP_001005522.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001005522.1 312 A6NH00 312 100% 0 0

Chromosomal Locations for CCDS 31100.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 247921018 247921956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGGAAAATGGGAGCTATACCTCTTATTTCATTCTCCTAGGACTCTTTAACCACACCAGAGCCCACCAAG
TCCTCTTCATGATGGTTCTGAGTATCGTTTTGACCTCCCTGTTTGGCAATTCCCTCATGATTCTCCTGAT
TCACTGGGACCACCGGCTCCACACGCCCATGTACTTCCTCCTGAGCCAACTTTCCCTCATGGACGTGATG
CTGGTTTCCACCACTGTGCCCAAAATGGCGGCTGACTACTTGACCGGAAGTAAGGCCATCTCCCGCGCTG
GCTGTGGTGCGCAGATCTTCTTCCTCCCCACACTGGGTGGTGGAGAGTGCTTCCTCTTAGCAGCCATGGC
CTATGACCGCTATGCGGCTGTCTGCCACCCACTCCGATATCCCACTCTCATGAGCTGGCAGCTGTGCCTG
AGGATGAACCTGTCGTGTTGGCTCCTGGGTGCAGCTGACGGGCTCCTGCAGGCTGTTGCTACCCTGAGCT
TCCCATATTGCGGTGCACACGAGATCGATCACTTCTTCTGCGAGACCCCCGTGCTGGTGCGTTTGGCTTG
TGCTGACACTTCAGTCTTCGAAAACGCCATGTACATCTGCTGTGTGTTAATGCTCCTGGTCCCCTTTTCC
CTCATCCTGTCCTCCTATGGTCTCATCCTCGCTGCTGTTCTGCACATGCGCTCTACAGAAGCCCGCAAGA
AGGCCTTTGCCACCTGCTCTTCACATGTGGCTGTGGTGGGACTCTTTTATGGAGCTGCCATTTTTACCTA
TATGAGACCCAAATCCCACAGGTCCACTAACCACGACAAGGTTGTGTCAGCCTTCTATACTATGTTCACC
CCTTTACTAAACCCCCTCATCTACAGTGTGAAGAACAGTGAGGTGAAGGGAGCCCTGACAAGGTGTATGG
GTCGGTGTGTGGCCTTAAGTCGTGAATAA

Translation (312 aa):
MENGSYTSYFILLGLFNHTRAHQVLFMMVLSIVLTSLFGNSLMILLIHWDHRLHTPMYFLLSQLSLMDVM
LVSTTVPKMAADYLTGSKAISRAGCGAQIFFLPTLGGGECFLLAAMAYDRYAAVCHPLRYPTLMSWQLCL
RMNLSCWLLGAADGLLQAVATLSFPYCGAHEIDHFFCETPVLVRLACADTSVFENAMYICCVLMLLVPFS
LILSSYGLILAAVLHMRSTEARKKAFATCSSHVAVVGLFYGAAIFTYMRPKSHRSTNHDKVVSAFYTMFT
PLLNPLIYSVKNSEVKGALTRCMGRCVALSRE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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