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Report for CCDS31413.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31413.1 Public Homo sapiens 11 OR2AG2 24 110 108 CCDS HistoryNCBI Gene:338755Re-query CCDS DB by CCDS ID:31413.1Re-query CCDS DB by GeneID:338755See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 31413.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000641169.1 ENSP00000493311.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000641169.1Link to Ensembl Protein Viewer:ENSP00000493311.1Re-query CCDS DB by Nucleotide ID:ENST00000641169Re-query CCDS DB by Protein ID:ENSP00000493311
Original member Current member EBI ENST00000641124.1 ENSP00000493362.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000641124.1Link to Ensembl Protein Viewer:ENSP00000493362.1Re-query CCDS DB by Nucleotide ID:ENST00000641124Re-query CCDS DB by Protein ID:ENSP00000493362
Original member Current member NCBI NM_001004490.2 NP_001004490.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001004490.2Link to Protein Sequence:NP_001004490.1Re-query CCDS DB by Nucleotide ID:NM_001004490Re-query CCDS DB by Protein ID:NP_001004490Link to BLAST:NP_001004490.1
Original member Current member NCBI NM_001386053.1 NP_001372982.1 Accepted alive Link to Nucleotide Sequence:NM_001386053.1Link to Protein Sequence:NP_001372982.1Re-query CCDS DB by Nucleotide ID:NM_001386053Re-query CCDS DB by Protein ID:NP_001372982Link to BLAST:NP_001372982.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001004490.1 316 A6NM03 316 100% 0 0
NP_001372982.1 316 A6NM03 316 100% 0 0

Chromosomal Locations for CCDS 31413.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 6768007 6768957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (951 nt):
ATGGAGCTCCGGAACTCCACCTTGGGAAGCGGCTTCATCTTGGTGGGGATTCTGAATGACAGTGGGTCTC
CTGAACTGCTCTATGCTACATTTACAATCCTATACATGTTGGCACTGACCAGCAATGGTCTGCTGCTCCT
GGCCATCACCATAGAAGCCCGGCTCCACATGCCCATGTACCTCCTGCTTGGGCAGCTCTCTCTCATGGAC
CTCCTGTTCACATCTGTTGTCACTCCCAAGGCCCTTGCGGACTTTCTGCGCAGAGAAAACACTATCTCCT
TTGGAGGCTGTGCACTTCAGATGTTCCTGGCACTGACAATGGGTAGCGCTGAGGACCTCCTACTGGCCTT
CATGGCCTATGACAGGTATGTGGCCATTTGTCATCCTCTGAAATACATGACCCTCATGAGCCCAAGAGTC
TGCTGGATCATGGTGGCCACATCCTGGATCCTGGCATCCCTGATTGCTATAGGACATACCATGTACACTA
TGCACCTCCCTTTCTGTGTGTCCTGGGAAATCAGGCATCTGCTCTGTGAGATCCCACCCTTGCTGAAGTT
GGCCTGTGCTGATACCTCCAGGTATGAGCTTATAATATACGTGACAGGTGTGACTTTCCTCTTGCTCCCC
ATTTCTGCCATTGTGGCCTCCTACACACTAGTCCTATTCACTGTGCTTCGTATGCCATCAAATGAGGGGA
GGAAGAAAGCCCTTGTCACCTGCTCTTCCCACCTGATTGTGGTCGGGATGTTCTATGGAGCTGCCACATT
CATGTATGTCTTGCCCAGTTCCTTCCACAGCCCCAAACAAGACAACATCATCTCTGTTTTCTACACAATT
GTCACTCCAGCCCTGAATCCACTCATCTACAGCCTGAGGAATAAGGAGGTCATGCGGGCCTTGAGGAGGG
TCCTGGGAAAATACATACTGCTGGCACATTCCACGCTCTAG

Translation (316 aa):
MELRNSTLGSGFILVGILNDSGSPELLYATFTILYMLALTSNGLLLLAITIEARLHMPMYLLLGQLSLMD
LLFTSVVTPKALADFLRRENTISFGGCALQMFLALTMGSAEDLLLAFMAYDRYVAICHPLKYMTLMSPRV
CWIMVATSWILASLIAIGHTMYTMHLPFCVSWEIRHLLCEIPPLLKLACADTSRYELIIYVTGVTFLLLP
ISAIVASYTLVLFTVLRMPSNEGRKKALVTCSSHLIVVGMFYGAATFMYVLPSSFHSPKQDNIISVFYTI
VTPALNPLIYSLRNKEVMRALRRVLGKYILLAHSTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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