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Report for CCDS19161.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19161.1 Public Mus musculus 5 Slc35f6 23 108 98 CCDS HistoryNCBI Gene:74919Re-query CCDS DB by CCDS ID:19161.1Re-query CCDS DB by GeneID:74919See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19161.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062962.11 ENSMUSP00000058680.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062962.11Link to Ensembl Protein Viewer:ENSMUSP00000058680.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000062962Re-query CCDS DB by Protein ID:ENSMUSP00000058680
Original member Current member NCBI NM_175675.3 NP_783606.2 Accepted alive Link to Nucleotide Sequence:NM_175675.3Link to Protein Sequence:NP_783606.2Re-query CCDS DB by Nucleotide ID:NM_175675Re-query CCDS DB by Protein ID:NP_783606Link to BLAST:NP_783606.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_783606.2 372 Q8VE96 372 100% 0 0

Chromosomal Locations for CCDS 19161.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 30648022 30648098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30654748 30654820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30655495 30655666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30655888 30656100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30656747 30656857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30657377 30657849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1119 nt):
ATGGCCTGGACTAAGTACCAGTTGTTCCTGGCCGGGCTTATGCTGGTCACCGGCTCCATCAACACGCTTT
CGGCAAAGTGGGCCGACAACTTTGTAGCTGAGGGCTGTGGAGGAAGCCAGGAGCACAGCTTCAAGCATCC
CTTCGTCCAGGCAGTGGGCATGTTCCTGGGAGAGTTCTCCTGCCTTGCTGCCTTCTACCTGCTCAAATGC
CAAGGCAGAAGACAGTCAGCCTCCAGTGTAGAGCCCCAGCAGCCCTTCAACACCCTGCTTTTCCTGCCCC
CAGCCCTGTGTGACATGACTGGGACCAGCATCATGTACGTGGCCCTGAACATGACCAGTGCCTCAAGCTT
TCAGATGCTGCGGGGTGCAGTGATCATCTTCACAGGCCTGTTCTCAGTGGCCTTCCTGGACCGGAGGCTG
GCACCAAGCCAGTGGCTGGGCATCCTGATCACTATTGCGGGACTGGTGGTAGTTGGCCTAGCTGACCTCC
TGAGCAAGCATGACAGTCAACACAAGCTCAGTGAAGTCATCACAGGTGACTTGTTGATCATCATGGCCCA
GATCATCATTGCCATCCAGATGGTGCTAGAGGAGAAGTTTGTCTACAAACACAACATCCACCCACTCCAG
GCAGTAGGCATCGAGGGCTTCTTCGGCTTCGTGATCCTCTCGCTGCTCCTTGTGCCTATGTTCTACATCC
CCACGGCCTCCTTTAGTGGGAACCCTCGCGGGGTGCTGGAAGACGCGCTGGATGCCTTCTGCCAAGTGGG
CCGACAGCCCCTGATTGCCCTGGCTCTGCTAGGCAACATCAGCAGCATTGCCTTCTTCAACTTTTCGGGC
ATCAGCGTCACCAAGGAACTGAGTGCCACCACCCGCATGGTGCTAGACACCCTGCGCACCATAGTCATCT
GGGCCTTTACCCTCGCACTGGGCTGGGAGATCTTCTATCCATTGCAGATCCTTGGTTTCCTCATCCTCCT
TATGGGCACCGCCCTCTACAATGGGCTGCACCGACCACTGCTAGCCTTCCTGTCCAGACGCTGGCGACTC
CCTACCCAGGAGGGAGAGCAAGAGAGACTGCTAGGTGACAGTCGGACTCCCATCAATGAAGCCAGCTGA

Translation (372 aa):
MAWTKYQLFLAGLMLVTGSINTLSAKWADNFVAEGCGGSQEHSFKHPFVQAVGMFLGEFSCLAAFYLLKC
QGRRQSASSVEPQQPFNTLLFLPPALCDMTGTSIMYVALNMTSASSFQMLRGAVIIFTGLFSVAFLDRRL
APSQWLGILITIAGLVVVGLADLLSKHDSQHKLSEVITGDLLIIMAQIIIAIQMVLEEKFVYKHNIHPLQ
AVGIEGFFGFVILSLLLVPMFYIPTASFSGNPRGVLEDALDAFCQVGRQPLIALALLGNISSIAFFNFSG
ISVTKELSATTRMVLDTLRTIVIWAFTLALGWEIFYPLQILGFLILLMGTALYNGLHRPLLAFLSRRWRL
PTQEGEQERLLGDSRTPINEAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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