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Report for CCDS83711.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83711.1 Public Mus musculus 10 Ipmk 23 108 98 CCDS HistoryNCBI Gene:69718Re-query CCDS DB by CCDS ID:83711.1Re-query CCDS DB by GeneID:69718See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83711.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000121446.1 ENSMUSP00000112568.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121446.1Link to Ensembl Protein Viewer:ENSMUSP00000112568.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121446Re-query CCDS DB by Protein ID:ENSMUSP00000112568
Original member NCBI NM_001347191.1 NP_001334120.1 Updated not alive Link to Nucleotide Sequence:NM_001347191.1Link to Protein Sequence:NP_001334120.1Re-query CCDS DB by Nucleotide ID:NM_001347191Re-query CCDS DB by Protein ID:NP_001334120
Current member NCBI NM_001347191.2 NP_001334120.1 Accepted alive Link to Nucleotide Sequence:NM_001347191.2Link to Protein Sequence:NP_001334120.1Re-query CCDS DB by Nucleotide ID:NM_001347191Re-query CCDS DB by Protein ID:NP_001334120Link to BLAST:NP_001334120.1

Chromosomal Locations for CCDS 83711.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 71347952 71348090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 71363450 71363535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 71366009 71366105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 71372705 71372880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 71376705 71376786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 71381205 71381818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1194 nt):
ATGGCCGCCGAGCCCCCAGCGCTGCGCCTGCGGCCGCCGGGAAGCACCGGAGACAGCCCGCCGGTGCCGC
GCCTGCTCGGAGGCTGCGTGCCGCTGTCGCATCAGGTGGCTGGCCACATGTACGGCAAGGACAAAGTGGG
CATACTCCAGCACCCAGATGGTACAGTTCTGAAACAGCTACAGCCACCGCCACGGGGCCCAAGAGAGCTG
GAATTTTATACCATGGTTTACGCTGCTGACTGTGCCGATGCTGTTCTCCTGGAGCTGCGAAAACACCTGC
CCAAATACTACGGCGTCTGGTCCCCTCCCACCGCACCAAACGCAGATGTGTACCTAAAACTGGAAGATGT
GACTCATAAGTTTAACAAACCCTGTATAATGGACGTGAAGATTGGGCGGAAGAGCTACGACCCCTTTGCG
TCATCAGAGAAGATTCAGCAGCAGGTCAGCAAGTACCCTCTGATGGAGGAGATCGGGTTCCTGGTGCTCG
GCATGAGGGTTTATCATCTTCACTCTGACAGCTACGAGACACAAAACCAGCACTATGGAAGAGGCCTAAC
GAAAGAGACCCTGAAGGAAGGCGTCTCCAAGTTTTTCCACAATGGCTTCTGTTTAAGAAAAGATGCGATT
GCCGCCAGTATTCAGAAGGTAGAGAAGATTCTCCAGTGGTTTGAAAATCAGAAGCAGCTTAACTTTTACG
CAAGTTCTTTACTGTTTGTTTATGAAGGTTCATCTCAGCCAGCTACTACAAAAGCAAACGATAGAACTTT
GGCGGGGAGGTTTCTCTCCAAAGGACCCCTGACGGATGCGGACGGCCTGGAGTGCAATAACAACTTCCAC
CTGTTCGGCGCCCCGCCCAACGGGATGTCGGTGGGCAAGAGCTTATCGAAGGCGTACTCGAGGCACAGAA
AGCTGTATGCAAAAAAGCACCAGAGTCAGACTTCCCTGAAAGTCGAAACGCTGGAGCAAGACAACGGGTG
GAGAAGCATGTCCCAGGAACACTTAAACGGAAACGTGCTTGCCCAACTGGAAAAGGTGTTCTACCACCTT
CCCGCGGGTCGTCCGGAGATCCCGGAAGCGGAAGTACGGATGATAGACTTTGCTCACGTGTTCCCTAGCA
ACACAGTCGATGAGGGGTATGTTTACGGTCTGAAGCATCTAATTGCCGTGCTTCGGAGTATTTTAGACAG
TTGA

Translation (397 aa):
MAAEPPALRLRPPGSTGDSPPVPRLLGGCVPLSHQVAGHMYGKDKVGILQHPDGTVLKQLQPPPRGPREL
EFYTMVYAADCADAVLLELRKHLPKYYGVWSPPTAPNADVYLKLEDVTHKFNKPCIMDVKIGRKSYDPFA
SSEKIQQQVSKYPLMEEIGFLVLGMRVYHLHSDSYETQNQHYGRGLTKETLKEGVSKFFHNGFCLRKDAI
AASIQKVEKILQWFENQKQLNFYASSLLFVYEGSSQPATTKANDRTLAGRFLSKGPLTDADGLECNNNFH
LFGAPPNGMSVGKSLSKAYSRHRKLYAKKHQSQTSLKVETLEQDNGWRSMSQEHLNGNVLAQLEKVFYHL
PAGRPEIPEAEVRMIDFAHVFPSNTVDEGYVYGLKHLIAVLRSILDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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