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Report for CCDS27276.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27276.1 Public Mus musculus 14 Lcp1 23 108 98 CCDS HistoryNCBI Gene:18826Re-query CCDS DB by CCDS ID:27276.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27276.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000145303.7 ENSMUSP00000116271.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000145303.7Link to Ensembl Protein Viewer:ENSMUSP00000116271.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000145303Re-query CCDS DB by Protein ID:ENSMUSP00000116271
Original member Current member EBI ENSMUST00000131802.1 ENSMUSP00000117137.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000131802.1Link to Ensembl Protein Viewer:ENSMUSP00000117137.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000131802Re-query CCDS DB by Protein ID:ENSMUSP00000117137
Original member Current member EBI ENSMUST00000124499.7 ENSMUSP00000121201.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000124499.7Link to Ensembl Protein Viewer:ENSMUSP00000121201.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000124499Re-query CCDS DB by Protein ID:ENSMUSP00000121201
Original member NCBI NM_001247984.1 NP_001234913.1 Updated not alive Link to Nucleotide Sequence:NM_001247984.1Link to Protein Sequence:NP_001234913.1Re-query CCDS DB by Nucleotide ID:NM_001247984Re-query CCDS DB by Protein ID:NP_001234913
Current member NCBI NM_001247984.2 NP_001234913.1 Accepted alive Link to Nucleotide Sequence:NM_001247984.2Link to Protein Sequence:NP_001234913.1Re-query CCDS DB by Nucleotide ID:NM_001247984Re-query CCDS DB by Protein ID:NP_001234913Link to BLAST:NP_001234913.1
Original member NCBI NM_008879.4 NP_032905.2 Updated not alive Link to Nucleotide Sequence:NM_008879.4Link to Protein Sequence:NP_032905.2Re-query CCDS DB by Nucleotide ID:NM_008879Re-query CCDS DB by Protein ID:NP_032905
Current member NCBI NM_008879.5 NP_032905.2 Accepted alive Link to Nucleotide Sequence:NM_008879.5Link to Protein Sequence:NP_032905.2Re-query CCDS DB by Nucleotide ID:NM_008879Re-query CCDS DB by Protein ID:NP_032905Link to BLAST:NP_032905.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001234913.1 627 Q61233 627 100% 0 0
NP_032905.2 627 Q61233 627 100% 0 0

Chromosomal Locations for CCDS 27276.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 75198100 75198163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75199280 75199443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75200380 75200509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75202636 75202768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75204565 75204646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75206119 75206284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75208420 75208562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75210439 75210534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75212331 75212526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75214485 75214563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75215109 75215223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75216328 75216461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75224071 75224194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75226967 75227091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75229206 75229338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1884 nt):
ATGGCCAGAGGATCCGTGTCTGACGAAGAAATGATGGAGCTCAGAGAGGCTTTTGCCAAAGTTGATACCG
ATGGCAACGGATACATCAGCTGCAATGAGCTAAATGACTTGTTCAAGGCCGCCTGCCTGCCTCTGCCTGG
GTACCGAGTGAGAGAAATCACAGAAAACCTGATGGCCACAGGTGATCTGGACCAAGATGGAAAGATCAGC
TTTGATGAGTTTATCAAGGTCTTCCATGGCTTAAAAAGCACCGAGGTTGCCAAAACCTTCCGAAAAGCTA
TCAACAAGAAGGAAGGGATCTGTGCGATTGGCGGCACCTCTGAGCAGTCCAGCGTTGGTACCCAGCACTC
TTACTCAGAGGAAGAAAAGTATGCCTTTGTCAACTGGATAAACAAAGCCCTGGAGAATGACCCCGACTGC
CGGCATGTCATCCCCATGAACCCCAACACCGACGATCTCTTCAATGCTGTAGGCGATGGCATAGTTCTTT
GTAAAATGATCAACCTGTCTGTGCCAGACACGATTGACGAGAGAACGATCAACAAGAAAAAGCTCACACC
ATTCACCATTCAGGAAAACTTGAACTTGGCTCTGAACTCTGCCTCTGCCATTGGGTGCCACGTGGTTAAT
ATAGGGGCCGAGGACCTGAAGGAGGGCAAGCCTTACCTGGTCCTGGGACTTTTGTGGCAAGTCATCAAGA
TTGGGTTGTTTGCTGACATTGAACTCAGCAGAAATGAAGCTCTGATTGCTCTTTTGAGAGAAGGAGAGAG
CCTAGAGGATTTGATGAAGTTGTCTCCTGAAGAACTCCTGCTGCGGTGGGCTAACTACCACCTAGAAAAC
GCAGGCTGCACCAAAATCACCAACTTCAGCACCGACATCAAGGACTCCAAAGCTTATTACCACCTGCTCG
AGCAAGTGGCTCCAAAAGGAGATGAAGAAGGGATCCCGGCGGTTGTGATTGACATGTCAGGACTGAGGGA
GAAGGATGACATCCAGAGGGCAGAGTGCATGCTGCAACAGGCGGAGAGGCTGGGCTGCCGGCAGTTTGTC
ACAGCTACTGATGTTGTCCGAGGGAACCCCAAGTTGAACCTGGCCTTCATTGCCAACCTCTTCAACAAAT
ACCCTGCCTTACACAAACCAGAGAACCAGGACATTGACTGGGGGGCTCTCGAAGGTGAGACGAGGGAAGA
GCGGACCTTCAGGAATTGGATGAACTCCCTGGGCGTTAACCCGCGCGTCAATCACTTGTACAGCGACTTA
TCGGATGCCTTAGTCATCTTCCAGCTCTATGAGAAGATCAAAGTCCCTGTTGATTGGAACAGAGTAAACA
AGCCTCCATACCCCAAGCTGGGGGGCAATATGAAAAAGCTGGAGAACTGTAATTATGCAGTGGACCTGGG
GAAGAATCAAGCTAAATTCTCCCTGGTTGGCATCGCAGGACAAGACCTCAATGAAGGAAACCGAACTCTC
ACGCTGGCATTGGTTTGGCAGCTCATGAGAAGGTACACACTGAATATCCTGGAAGATATCGGAGGTGGAC
AGAAGGTCAATGATGACATTATTGTCAACTGGGTGAATACGACCTTGAAGGAGGCACAGAAAAGCTCATC
CATTGCTAGCTTCAAGGACCCAAAGATCAGTACCAGCCTCCCGGTTCTGGATCTCATTGACGCCATTCAG
CCAGGTTCCATAAACTATGACCTTCTAAAGACAGAAAACCTGGATGATGAAGAGAAACTCAACAATGCAA
AGTATGCCATCTCTATGGCCAGAAAAATCGGAGCAAGGGTGTACGCCCTCCCAGAAGACCTGGTTGAAGT
GAACCCCAAAATGGTCATGACAGTGTTTGCCTGCCTCATGGGGAAAGGGATGAAGAGGGTGTAA

Translation (627 aa):
MARGSVSDEEMMELREAFAKVDTDGNGYISCNELNDLFKAACLPLPGYRVREITENLMATGDLDQDGKIS
FDEFIKVFHGLKSTEVAKTFRKAINKKEGICAIGGTSEQSSVGTQHSYSEEEKYAFVNWINKALENDPDC
RHVIPMNPNTDDLFNAVGDGIVLCKMINLSVPDTIDERTINKKKLTPFTIQENLNLALNSASAIGCHVVN
IGAEDLKEGKPYLVLGLLWQVIKIGLFADIELSRNEALIALLREGESLEDLMKLSPEELLLRWANYHLEN
AGCTKITNFSTDIKDSKAYYHLLEQVAPKGDEEGIPAVVIDMSGLREKDDIQRAECMLQQAERLGCRQFV
TATDVVRGNPKLNLAFIANLFNKYPALHKPENQDIDWGALEGETREERTFRNWMNSLGVNPRVNHLYSDL
SDALVIFQLYEKIKVPVDWNRVNKPPYPKLGGNMKKLENCNYAVDLGKNQAKFSLVGIAGQDLNEGNRTL
TLALVWQLMRRYTLNILEDIGGGQKVNDDIIVNWVNTTLKEAQKSSSIASFKDPKISTSLPVLDLIDAIQ
PGSINYDLLKTENLDDEEKLNNAKYAISMARKIGARVYALPEDLVEVNPKMVMTVFACLMGKGMKRV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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