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Report for CCDS19176.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19176.1 Public Mus musculus 5 Eif2b4 23 108 98 CCDS HistoryNCBI Gene:13667Re-query CCDS DB by CCDS ID:19176.1Re-query CCDS DB by GeneID:13667See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19176.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077693.9 ENSMUSP00000076875.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077693.9Link to Ensembl Protein Viewer:ENSMUSP00000076875.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000077693Re-query CCDS DB by Protein ID:ENSMUSP00000076875
Original member Current member NCBI NM_010122.2 NP_034252.2 Accepted alive Link to Nucleotide Sequence:NM_010122.2Link to Protein Sequence:NP_034252.2Re-query CCDS DB by Nucleotide ID:NM_010122Re-query CCDS DB by Protein ID:NP_034252Link to BLAST:NP_034252.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034252.2 524 Q61749-1 524 100% 0 0

Chromosomal Locations for CCDS 19176.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 31187601 31187800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31187914 31188094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31189569 31189746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31189881 31190008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31190359 31190461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31190582 31190658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31190837 31190951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31191149 31191240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31191365 31191447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31191541 31191747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31192153 31192288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31192582 31192625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31192993 31193023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1575 nt):
ATGGCTGCGGTGGCGGTGGCTGTTCGCGAAGAATCGAGATCCGAGATGAAGACTGAACTTTCTCCTCGGC
CCGGGGCAGCAGGGCGGGAGTTGACCCAAGAAGAGAAGCTTCAGCTTCGAAAAGAAAAGAAACAGCAGAA
GAAGAAACGGAAGGAGGAAAAGGGGGCAGACCAAGAAATTGGCTCTGCTGTGTCTGCAGCTCAACGGCAA
GACCCAATCAGAGAACTCCCAGGACCTGGTAGTCAGCTGGGAGGTACTGCTGGGGAGAAACTTCCAGCTG
GCCGGAGTAAGGCAGAACTTCGCGCCGAAAGGAGAGCCAAGCAGGAGGCAGAGCGGGCCCTGAAACAGGC
AAGAAAAGGGGAACAAGGAGGCGTCCCTCCTCAGGCCTGCCCCAGCACTGCTGGAGAAACCACCTCAGGA
GTGAAGCGTGTCCCCGAGCACACCCCAGCTGATGACCCCACACTTCTGAGGAGGCTCCTTAGAAAGCCAG
ATCGACAACAGGTTCCTACACGAAAGGATTACGGATCCAAAGTCAGTCTCTTCTCCCACCTGCCTCAGTA
CAGCAGACAAAGCTCCTTGACCCAGTACATGAGCATCCCATCCTCTGTGATCCACCCAGCCATGGTGAGA
CTCGGTCTGCAGTACTCCCAGGGCCTCATCAGTGGCTCCAATGCCCGGTGCATCGCACTGCTTCACGCCC
TGCAGCAGGTGATTCAGGATTACACAACACCTCCCAGTGAGGAACTCTCCAGGGATCTTGTAAATAAACT
AAAACCCTACATCAGCTTCCTGACGCAGTGCCGCCCCATGTCGGCAAGTATGTGCAACGCCATCAAGTTC
CTAACCAAGGAAGTCACTGGCATGAGCAGCTCCAAGCGGGAAGAGGAGGCCAAGTCAGAACTTAGAGAAG
CCCTCGACCGGTACGTGCAAGAGAAGATCGTGCTTGCAGCTCAGGCAATTTCACGATTTGCTTCTACAAA
GATCAGTGATGGGGACGTGATCCTGGTATATGGATGCTCATCTTTGGTGTCGAGAATTCTCCAGGAGGCC
AGGGTCGAGGGCAGGCGGTTTCGGGTGGTGGTGGTGGACAGCCGGCCCCGGCTGGAAGGAAGGCACATGC
TCCACTCTCTTGTCCGTGCTGGGGTCCCTACCTCCTATCTGCTGATTCCTGCAGCCTCCTATGTGCTTCC
AGAGGTTTCTAAGGTGCTATTGGGAGCTCATGCACTCCTGGCCAATGGATCTGTGATGTCTCGGGTAGGG
ACAGCACAGTTGGCCCTGGTGGCTCGAGCTCATAACGTTCCAGTACTGGTCTGCTGTGAAACGTACAAGT
TCTGTGAACGTGTGCAGACTGATGCCTTTGTCTCCAACGAGCTAGATGATCCCGATGATCTGCAGTGTAA
GCGGGGAGACCAGGTGGCCCTGGCTAACTGGCAGAGCCACCCGTCCCTCCGGTTGTTGAATCTGGTCTAT
GACGTGACTCCACCTGAGCTCGTGGATCTGGTGATCACAGAGTTGGGCATGATCCCTTGCAGTTCTGTGC
CTGTTGTTCTTCGAGTCAAGAGCAGTGACCAGTGA

Translation (524 aa):
MAAVAVAVREESRSEMKTELSPRPGAAGRELTQEEKLQLRKEKKQQKKKRKEEKGADQEIGSAVSAAQRQ
DPIRELPGPGSQLGGTAGEKLPAGRSKAELRAERRAKQEAERALKQARKGEQGGVPPQACPSTAGETTSG
VKRVPEHTPADDPTLLRRLLRKPDRQQVPTRKDYGSKVSLFSHLPQYSRQSSLTQYMSIPSSVIHPAMVR
LGLQYSQGLISGSNARCIALLHALQQVIQDYTTPPSEELSRDLVNKLKPYISFLTQCRPMSASMCNAIKF
LTKEVTGMSSSKREEEAKSELREALDRYVQEKIVLAAQAISRFASTKISDGDVILVYGCSSLVSRILQEA
RVEGRRFRVVVVDSRPRLEGRHMLHSLVRAGVPTSYLLIPAASYVLPEVSKVLLGAHALLANGSVMSRVG
TAQLALVARAHNVPVLVCCETYKFCERVQTDAFVSNELDDPDDLQCKRGDQVALANWQSHPSLRLLNLVY
DVTPPELVDLVITELGMIPCSSVPVVLRVKSSDQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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