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Report for CCDS39969.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39969.1 Public Mus musculus 7 Slc17a6 23 108 98 CCDS HistoryNCBI Gene:140919Re-query CCDS DB by CCDS ID:39969.1Re-query CCDS DB by GeneID:140919See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39969.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032710.6 ENSMUSP00000032710.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032710.6Link to Ensembl Protein Viewer:ENSMUSP00000032710.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000032710Re-query CCDS DB by Protein ID:ENSMUSP00000032710
Original member Current member NCBI NM_080853.3 NP_543129.3 Accepted alive Link to Nucleotide Sequence:NM_080853.3Link to Protein Sequence:NP_543129.3Re-query CCDS DB by Nucleotide ID:NM_080853Re-query CCDS DB by Protein ID:NP_543129Link to BLAST:NP_543129.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_543129.3 582 Q8BLE7 582 99.8282% 0 1

Chromosomal Locations for CCDS 39969.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 51622635 51622720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 51625281 51625533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 51626844 51626962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 51645005 51645119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 51646187 51646274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 51649152 51649238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 51658678 51658820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 51661431 51661580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 51666027 51666159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 51667407 51667517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 51667906 51668033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 51669025 51669360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1749 nt):
ATGGAGTCGGTAAAACAAAGGATTTTGGCCCCGGGGAAAGAGGGGATAAAGAATTTTGCTGGAAAATCCC
TCGGACAGATCTACAGGGTGCTGGAGAAGAAGCAGGACAACCGAGAGACCATCGAGCTGACAGAGGACGG
TAAGCCCCTGGAGGTGCCTGAGAAGAAGGCTCCGCTATGCGACTGCACGTGCTTCGGCCTGCCGCGCCGC
TACATCATAGCCATCATGAGCGGCCTCGGCTTCTGCATATCCTTCGGCATCCGCTGTAACCTGGGCGTGG
CCATCGTGGACATGGTCAACAACAGCACTATCCACCGCGGAGGCAAAGTTATCAAGGAGAAAGCCAAATT
TAACTGGGACCCCGAGACCGTGGGGATGATCCACGGATCGTTCTTCTGGGGCTATATCATCACCCAGATT
CCAGGAGGATATATCGCATCGCGGCTGGCTGCTAACCGGGTCTTTGGGGCTGCGATACTGCTCACCTCTA
CCCTCAATATGCTGATCCCATCTGCAGCCAGAGTGCATTATGGATGTGTCATCTTTGTTAGGATATTGCA
AGGACTTGTGGAGGGTGTCACCTACCCAGCCTGTCATGGGATATGGAGCAAGTGGGCCCCTCCCTTGGAG
AGGAGTAGGTTGGCTACAACCTCCTTTTGTGGTTCCTATGCTGGAGCAGTCATTGCAATGCCCTTAGCTG
GTATCCTTGTGCAGTACACTGGATGGTCGTCAGTATTTTATGTGTATGGAAGCTTTGGCATGGTCTGGTA
CATGTTCTGGCTTCTGGTGTCTTATGAGAGCCCTGCAAAGCATCCTACCATTACAGATGAAGAACGTAGG
TACATAGAGGAGAGCATTGGAGAGAGCGCAAATCTGCTAGGTGCAATGGAAAAATTTAAGACCCCATGGA
GGAAGTTTTTCACATCCATGCCCGTCTACGCGATAATTGTTGCCAACTTCTGCAGGAGCTGGACTTTTTA
TTTACTGCTCATCAGTCAGCCAGCTTATTTTGAGGAGGTTTTTGGATTTGAAATCAGCAAGGTTGGCATG
TTGTCTGCAGTCCCTCACCTTGTCATGACAATCATTGTGCCTATCGGGGGGCAAATTGCAGATTTCCTAA
GGAGCAAGCAAATTCTCTCAACAACTACAGTGAGAAAGATCATGAATTGTGGGGGTTTTGGCATGGAAGC
CACGCTGCTTCTGGTTGTTGGCTACTCTCATACTAGAGGGGTGGCCATCTCCTTCTTGGTGCTTGCAGTA
GGATTCAGTGGATTTGCTATCTCTGGTTTCAATGTTAATCACTTGGATATTGCTCCAAGATATGCCAGTA
TCTTAATGGGCATTTCAAATGGCGTTGGCACGCTGTCGGGGATGGTTTGCCCTATCATTGTTGGTGCAAT
GACAAAGAATAAGTCCCGTGAAGAATGGCAGTATGTCTTCCTCATTGCTGCACTCGTCCACTATGGTGGA
GTCATATTTTATGCACTATTTGCCTCAGGAGAGAAACAACCTTGGGCAGACCCTGAGGAAACAAGCGAAG
AAAAATGTGGCTTCATTCACGAAGATGAACTGGATGAAGAAACGGGGGACATCACTCAGAATTACATAAA
TTACGGTACCACCAAATCTTACGGTGCTACCTCACAGGAGAATGGAGGCTGGCCTAACGGCTGGGAGAAA
AAGGAAGAATTTGTGCAAGAAGGTGCGCAAGACGCGTACACCTATAAGGACCGAGATGATTATTCATAA

Translation (582 aa):
MESVKQRILAPGKEGIKNFAGKSLGQIYRVLEKKQDNRETIELTEDGKPLEVPEKKAPLCDCTCFGLPRR
YIIAIMSGLGFCISFGIRCNLGVAIVDMVNNSTIHRGGKVIKEKAKFNWDPETVGMIHGSFFWGYIITQI
PGGYIASRLAANRVFGAAILLTSTLNMLIPSAARVHYGCVIFVRILQGLVEGVTYPACHGIWSKWAPPLE
RSRLATTSFCGSYAGAVIAMPLAGILVQYTGWSSVFYVYGSFGMVWYMFWLLVSYESPAKHPTITDEERR
YIEESIGESANLLGAMEKFKTPWRKFFTSMPVYAIIVANFCRSWTFYLLLISQPAYFEEVFGFEISKVGM
LSAVPHLVMTIIVPIGGQIADFLRSKQILSTTTVRKIMNCGGFGMEATLLLVVGYSHTRGVAISFLVLAV
GFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPIIVGAMTKNKSREEWQYVFLIAALVHYGG
VIFYALFASGEKQPWADPEETSEEKCGFIHEDELDEETGDITQNYINYGTTKSYGATSQENGGWPNGWEK
KEEFVQEGAQDAYTYKDRDDYS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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