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Report for CCDS26556.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26556.1 Public Mus musculus 13 Pitx1 23 108 98 CCDS HistoryNCBI Gene:18740Re-query CCDS DB by CCDS ID:26556.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26556.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021968.6 ENSMUSP00000021968.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021968.6Link to Ensembl Protein Viewer:ENSMUSP00000021968.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000021968Re-query CCDS DB by Protein ID:ENSMUSP00000021968
Original member Current member NCBI NM_011097.2 NP_035227.1 Accepted alive Link to Nucleotide Sequence:NM_011097.2Link to Protein Sequence:NP_035227.1Re-query CCDS DB by Nucleotide ID:NM_011097Re-query CCDS DB by Protein ID:NP_035227Link to BLAST:NP_035227.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035227.1 315 P70314 315 100% 0 0

Chromosomal Locations for CCDS 26556.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 55826069 55826611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55828440 55828675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55830772 55830940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGGACGCCTTCAAGGGAGGCATGAGCCTGGAGAGGCTACCGGAGGGGCTGCGGCCACCGCCACCACCAC
CGCACGACATGGGGCCCAGCTTCCACCTGGCCCGCGCCGCCGACCCCCGGGAGCCGCTGGAGAACTCCGC
CAGCGAATCGTCCGACGCTGATCTGCCAGACAAGGAGCGCGGTGGGGAAGCCAAGGGGCCAGAGGATGGT
GGCGCGGGCAGTGCTGGCTGCGGCGGCGGTGCAGAGGACCCAGCTAAGAAGAAGAAACAGCGGCGGCAAC
GCACTCACTTCACAAGCCAGCAGTTGCAAGAGCTGGAGGCCACGTTCCAAAGGAACCGCTACCCCGACAT
GAGCATGAGAGAGGAGATCGCGGTGTGGACCAACCTCACTGAACCGCGAGTGCGGGTCTGGTTCAAGAAC
CGGCGAGCCAAATGGCGCAAGCGGGAGCGGAACCAGCAGTTGGACCTGTGCAAGGGCGGCTATGTGCCGC
AGTTCAGCGGCCTGGTGCAGCCCTACGAGGACGTGTACGCTGCCGGCTACTCCTACAACAACTGGGCGGC
CAAGAGCCTGGCCCCGGCGCCGCTGTCTACCAAGAGCTTTACCTTCTTCAACTCCATGAGCCCGCTCTCC
TCTCAATCCATGTTCTCGGCCCCCAGCTCCATCTCTTCCATGACCATGCCGTCCAGCATGGGCCCGGGCG
CCGTGCCCGGCATGCCCAACTCGGGCCTCAACAACATCAACAACCTCACCGGCTCCTCGCTCAACTCGGC
CATGTCGCCGGGCGCCTGCCCCTACGGCACCCCAGCCTCGCCCTACAGCGTCTACCGGGACACGTGCAAC
TCGAGCCTTGCCAGCCTGCGGCTCAAGTCCAAGCAGCACTCGTCGTTTGGCTATGGCGGTCTGCAGGGTC
CGGCGTCGGGGCTCAACGCTTGCCAGTACAACAGCTGA

Translation (315 aa):
MDAFKGGMSLERLPEGLRPPPPPPHDMGPSFHLARAADPREPLENSASESSDADLPDKERGGEAKGPEDG
GAGSAGCGGGAEDPAKKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSMREEIAVWTNLTEPRVRVWFKN
RRAKWRKRERNQQLDLCKGGYVPQFSGLVQPYEDVYAAGYSYNNWAAKSLAPAPLSTKSFTFFNSMSPLS
SQSMFSAPSSISSMTMPSSMGPGAVPGMPNSGLNNINNLTGSSLNSAMSPGACPYGTPASPYSVYRDTCN
SSLASLRLKSKQHSSFGYGGLQGPASGLNACQYNS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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