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Report for CCDS25052.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25052.1 Public Mus musculus 11 Pitpna 23 108 98 CCDS HistoryNCBI Gene:18738Re-query CCDS DB by CCDS ID:25052.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25052.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000143219.7 ENSMUSP00000115723.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000143219.7Link to Ensembl Protein Viewer:ENSMUSP00000115723.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000143219Re-query CCDS DB by Protein ID:ENSMUSP00000115723
Original member Current member NCBI NM_008850.2 NP_032876.1 Accepted alive Link to Nucleotide Sequence:NM_008850.2Link to Protein Sequence:NP_032876.1Re-query CCDS DB by Nucleotide ID:NM_008850Re-query CCDS DB by Protein ID:NP_032876Link to BLAST:NP_032876.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032876.1 271 P53810 271 100% 0 0

Chromosomal Locations for CCDS 25052.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 75588333 75588352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75592189 75592219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75598180 75598328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75603389 75603480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75608107 75608114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75609105 75609179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75612220 75612303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75619240 75619317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75619456 75619566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75620254 75620376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 75625465 75625509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (816 nt):
ATGGTGCTGCTCAAGGAGTATCGGGTCATCCTGCCTGTGTCTGTAGATGAGTATCAAGTGGGGCAGCTGT
ATTCTGTGGCTGAAGCCAGTAAAAATGAAACTGGTGGTGGGGAAGGTGTGGAGGTCCTGGTGAATGAGCC
CTACGAGAAGGACGATGGCGAGAAAGGCCAGTACACACACAAGATCTACCACTTACAGAGCAAAGTACCC
ACCTTTGTTCGAATGCTGGCCCCAGAAGGCGCCCTGAATATACACGAGAAAGCCTGGAATGCCTACCCTT
ACTGCAGAACCGTTATTACAAATGAGTACATGAAAGAAGATTTTCTGATTAAAATTGAAACCTGGCACAA
GCCAGACCTTGGCACCCAGGAGAATGTGCATAAACTGGAGCCTGAGGCATGGAAACATGTGGAAGCTATA
TATATAGACATCGCTGATCGAAGCCAAGTACTTAGCAAGGATTACAAGGCAGAGGAAGACCCAGCAAAAT
TTAAATCTGTCAAAACAGGACGCGGACCTTTGGGCCCGAATTGGAAGCAAGAACTTGTCAATCAGAAAGA
CTGCCCATATATGTGTGCATACAAACTGGTTACTGTCAAGTTCAAGTGGTGGGGCTTGCAGAACAAAGTG
GAAAACTTTATACATAAGCAAGAGAAGCGTCTGTTTACAAACTTTCACAGGCAGCTGTTCTGTTGGCTCG
ATAAATGGGTTGATCTGACTATGGATGACATTCGGAGGATGGAAGAAGAGACGAAGAGACAGCTGGATGA
GATGAGACAAAAGGACCCAGTGAAAGGAATGACAGCAGACGACTAG

Translation (271 aa):
MVLLKEYRVILPVSVDEYQVGQLYSVAEASKNETGGGEGVEVLVNEPYEKDDGEKGQYTHKIYHLQSKVP
TFVRMLAPEGALNIHEKAWNAYPYCRTVITNEYMKEDFLIKIETWHKPDLGTQENVHKLEPEAWKHVEAI
YIDIADRSQVLSKDYKAEEDPAKFKSVKTGRGPLGPNWKQELVNQKDCPYMCAYKLVTVKFKWWGLQNKV
ENFIHKQEKRLFTNFHRQLFCWLDKWVDLTMDDIRRMEEETKRQLDEMRQKDPVKGMTADD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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