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Report for CCDS15712.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15712.1 Public Mus musculus 2 Pip4k2a 23 108 98 CCDS HistoryNCBI Gene:18718Re-query CCDS DB by CCDS ID:15712.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15712.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006912.11 ENSMUSP00000006912.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006912.11Link to Ensembl Protein Viewer:ENSMUSP00000006912.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000006912Re-query CCDS DB by Protein ID:ENSMUSP00000006912
Original member Current member NCBI NM_008845.4 NP_032871.3 Accepted alive Link to Nucleotide Sequence:NM_008845.4Link to Protein Sequence:NP_032871.3Re-query CCDS DB by Nucleotide ID:NM_008845Re-query CCDS DB by Protein ID:NP_032871Link to BLAST:NP_032871.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032871.3 405 O70172 405 100% 0 0

Chromosomal Locations for CCDS 15712.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 18844383 18844460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 18845875 18845978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 18847434 18847677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 18852813 18852926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 18866112 18866150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 18872284 18872430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 18889052 18889204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 18906229 18906325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 18908055 18908152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 18997852 18997995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1218 nt):
ATGGCGACCCCTGGCAACCTGGGGTCCTCCGTCCTGGCGAGCAAGACCAAGACGAAGAAGAAGCACTTCG
TGGCTCAGAAAGTGAAGCTGTTCCGGGCCAGCGACCCGCTGCTCAGCGTGCTCATGTGGGGGGTCAACCA
TTCGATCAATGAACTGAGCCACGTTCAAATCCCTGTCATGTTGATGCCTGATGACTTCAAAGCCTACTCA
AAGATAAAGGTTGACAACCACCTTTTTAACAAGGAAAACATGCCGAGCCATTTCAAGTTTAAGGAATACT
GCCCAATGGTCTTCCGGAATCTGCGGGAGAGGTTTGGAATCGACGACCAAGATTTCCAGAATTCCTTGAC
CAGAAGTGCACCCCTTCCCAATGACTCCCAGGCTCGCAGCGGGGCTCGGTTTCACACGTCTTATGATAAA
AGATACGTCATCAAGACCATTACCAGTGAGGACGTGGCAGAGATGCACAACATCCTGAAGAAGTACCACC
AGTATATAGTGGAATGTCATGGGGTCACACTTCTTCCTCAGTTCTTGGGAATGTACCGGCTTAATGTCGA
TGGAGTGGAAATATATGTGATTGTTACAAGGAATGTGTTCAGCCACCGGCTATCTGTATATAGGAAATAC
GACTTAAAGGGCTCGACAGTGGCTAGAGAAGCTAGTGATAAAGAAAAGGCCAAAGAGCTGCCAACTTTAA
AGGATAATGACTTCATCAATGAGGGCCAAAAGATCTATATTGATGACAACAACAAAAAGATATTCCTAGA
AAAACTGAAAAAGGATGTCGAGTTCCTTGCACAGTTAAAACTCATGGACTACAGCCTCCTGGTGGGGATT
CACGATGTGGAGCGAGCAGAGCAGGAGGAGGTGGAGTGTGAGGAGAACGATGGGGAAGAAGAAGGAGAGA
GTGACAGCACCCACCCGATCGGGACGCCACCAGACAGTCCCGGAAATACACTCAACAGCTCACCACCCTT
GGCTCCTGGAGAGTTTGATCCAAACATTGATGTTTATGCAATTAAATGCCATGAGAATGCGCCTAGAAAA
GAGGTATACTTCATGGCGATTATTGACATCCTTACTCATTACGATGCAAAAAAGAAAGCTGCCCACGCTG
CAAAAACTGTTAAACATGGCGCTGGAGCTGAGATCTCGACTGTGAACCCAGAGCAGTATTCCAAGCGCTT
TTTGGACTTTATTGGGCACATCTTGTAA

Translation (405 aa):
MATPGNLGSSVLASKTKTKKKHFVAQKVKLFRASDPLLSVLMWGVNHSINELSHVQIPVMLMPDDFKAYS
KIKVDNHLFNKENMPSHFKFKEYCPMVFRNLRERFGIDDQDFQNSLTRSAPLPNDSQARSGARFHTSYDK
RYVIKTITSEDVAEMHNILKKYHQYIVECHGVTLLPQFLGMYRLNVDGVEIYVIVTRNVFSHRLSVYRKY
DLKGSTVAREASDKEKAKELPTLKDNDFINEGQKIYIDDNNKKIFLEKLKKDVEFLAQLKLMDYSLLVGI
HDVERAEQEEVECEENDGEEEGESDSTHPIGTPPDSPGNTLNSSPPLAPGEFDPNIDVYAIKCHENAPRK
EVYFMAIIDILTHYDAKKKAAHAAKTVKHGAGAEISTVNPEQYSKRFLDFIGHIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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