NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS3449.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3449.2 Public Homo sapiens 4 KLHL5 24 110 108 CCDS HistoryNCBI Gene:51088Re-query CCDS DB by CCDS ID:3449.2Re-query CCDS DB by GeneID:51088See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 3449.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261426.10 ENSP00000261426.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000261426.10Link to Ensembl Protein Viewer:ENSP00000261426.6Re-query CCDS DB by Nucleotide ID:ENST00000261426Re-query CCDS DB by Protein ID:ENSP00000261426
Original member Current member NCBI NM_199039.4 NP_950240.3 Accepted alive Link to Nucleotide Sequence:NM_199039.4Link to Protein Sequence:NP_950240.3Re-query CCDS DB by Nucleotide ID:NM_199039Re-query CCDS DB by Protein ID:NP_950240Link to BLAST:NP_950240.3

Chromosomal Locations for CCDS 3449.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 39062653 39063035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39081103 39081239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39081963 39082159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39086515 39086727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39096692 39096878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39103287 39103511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39107569 39107731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39113020 39113232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39115159 39115330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 39121010 39121066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1947 nt):
ATGTCTGGTTCTCGTAAAGAGTTTGATGTGAAACAGATTTTGAAAATCAGATGGAGGTGGTTTGGTCATC
AAGCATCATCTCCTAATTCTACAGTTGACAGCCAGCAGGGAGAATTTTGGAACCGAGGACAGACTGGAGC
AAACGGTGGGAGAAAGTTTTTAGATCCATGTAGCCTACAATTGCCTTTGGCTTCAATTGGTTACCGAAGG
TCCAGCCAACTGGATTTTCAGAATTCACCTTCTTGGCCAATGGCATCCACCTCTGAAGTCCCTGCATTTG
AGTTTACAGCAGAAGATTGTGGCGGTGCACATTGGCTGGATAGACCAGAAGTGGATGATGGCACTAGTGA
AGAAGAAAATGAATCTGATTCCAGTTCATGCAGATTGGTGCTCTCCTCTGTCTCAGACTATTTTGCTGCC
ATGTTTACTAATGATGTCAGAGAGGCAAGACAAGAAGAAATAAAAATGGAAGGTGTAGAACCAAATTCGT
TGTGGTCCTTGATCCAGTATGCTTATACAGGCCGCCTTGAATTAAAAGAAGATAATATTGAGTGCCTGTT
ATCTACAGCTTGCCTTCTTCAGCTTTCACAGGTTGTAGAAGCATGCTGTAAGTTTTTAATGAAACAGCTT
CATCCATCCAACTGTCTTGGAATTCGTTCTTTTGCTGATGCCCAAGGTTGTACAGATTTGCATAAAGTGG
CTCACAATTATACTATGGAGCATTTCATGGAAGTAATCAGAAACCAGGAATTTGTATTATTACCAGCCAG
CGAAATTGCAAAGCTCTTGGCTAGTGATGACATGAACATTCCTAATGAGGAGACAATATTGAATGCACTT
CTTACTTGGGTCCGTCATGATTTGGAACAGAGACGGAAAGATCTAAGTAAACTTTTGGCTTATATTAGGC
TACCTCTTCTTGCACCACAGTTCCTGGCAGACATGGAAAATAATGTACTTTTTCGGGATGATATAGAATG
TCAGAAACTCATTATGGAAGCAATGAAGTACCATTTATTACCAGAGAGACGACCCATGTTACAAAGTCCT
CGGACAAAACCTAGGAAGTCAACTGTTGGTACATTATTTGCAGTTGGGGGAATGGATTCAACAAAAGGAG
CAACAAGCATTGAAAAGTATGATCTCCGTACAAATATGTGGACTCCAGTAGCAAATATGAATGGGAGGAG
GCTACAGTTCGGTGTTGCAGTGCTAGATGACAAACTGTATGTGGTTGGAGGAAGAGATGGACTGAAGACT
TTGAATACTGTAGAGTGCTACAACCCCAAAACAAAAACTTGGAGTGTGATGCCACCTATGTCCACACATA
GACATGGCCTTGGTGTGGCTGTACTGGAAGGTCCCATGTATGCCGTAGGAGGACATGATGGCTGGAGCTA
TCTGAACACAGTGGAAAGATGGGACCCTCAGGCTCGCCAGTGGAATTTTGTTGCCACTATGTCTACCCCT
AGGAGTACAGTAGGTGTGGCAGTACTAAGTGGAAAACTTTATGCAGTTGGTGGTCGTGATGGAAGTTCTT
GTCTCAAATCAGTAGAATGTTTTGATCCTCATACTAATAAGTGGACACTGTGTGCACAGATGTCAAAAAG
GAGAGGTGGCGTAGGAGTGACGACCTGGAATGGACTGCTGTATGCTATAGGGGGGCACGATGCTCCCGCA
TCCAACTTGACTTCCAGACTCTCAGACTGTGTGGAAAGATATGATCCCAAAACAGACATGTGGACTGCAG
TAGCATCCATGAGCATCAGCAGAGATGCAGTGGGGGTCTGTTTACTTGGTGATAAGTTATATGCTGTTGG
GGGGTATGATGGACAGGCATACCTTAATACTGTGGAGGCTTATGATCCCCAGACAAATGAGTGGACCCAG
GTTGCTCCACTGTGCCTAGGAAGAGCTGGAGCTTGTGTTGTGACTGTAAAATTATAA

Translation (648 aa):
MSGSRKEFDVKQILKIRWRWFGHQASSPNSTVDSQQGEFWNRGQTGANGGRKFLDPCSLQLPLASIGYRR
SSQLDFQNSPSWPMASTSEVPAFEFTAEDCGGAHWLDRPEVDDGTSEEENESDSSSCRLVLSSVSDYFAA
MFTNDVREARQEEIKMEGVEPNSLWSLIQYAYTGRLELKEDNIECLLSTACLLQLSQVVEACCKFLMKQL
HPSNCLGIRSFADAQGCTDLHKVAHNYTMEHFMEVIRNQEFVLLPASEIAKLLASDDMNIPNEETILNAL
LTWVRHDLEQRRKDLSKLLAYIRLPLLAPQFLADMENNVLFRDDIECQKLIMEAMKYHLLPERRPMLQSP
RTKPRKSTVGTLFAVGGMDSTKGATSIEKYDLRTNMWTPVANMNGRRLQFGVAVLDDKLYVVGGRDGLKT
LNTVECYNPKTKTWSVMPPMSTHRHGLGVAVLEGPMYAVGGHDGWSYLNTVERWDPQARQWNFVATMSTP
RSTVGVAVLSGKLYAVGGRDGSSCLKSVECFDPHTNKWTLCAQMSKRRGGVGVTTWNGLLYAIGGHDAPA
SNLTSRLSDCVERYDPKTDMWTAVASMSISRDAVGVCLLGDKLYAVGGYDGQAYLNTVEAYDPQTNEWTQ
VAPLCLGRAGACVVTVKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH