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Report for CCDS94143.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
94143.1 Public Homo sapiens 7 LRRD1 24 110 108 CCDS HistoryNCBI Gene:401387Re-query CCDS DB by CCDS ID:94143.1Re-query CCDS DB by GeneID:401387See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 94143.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000343318.9 ENSP00000339642.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000343318.9Link to Ensembl Protein Viewer:ENSP00000339642.5Re-query CCDS DB by Nucleotide ID:ENST00000343318Re-query CCDS DB by Protein ID:ENSP00000339642
Original member Current member NCBI NM_001384932.1 NP_001371861.1 Accepted alive Link to Nucleotide Sequence:NM_001384932.1Link to Protein Sequence:NP_001371861.1Re-query CCDS DB by Nucleotide ID:NM_001384932Re-query CCDS DB by Protein ID:NP_001371861Link to BLAST:NP_001371861.1
Original member Current member NCBI NM_001384933.1 NP_001371862.1 Accepted alive Link to Nucleotide Sequence:NM_001384933.1Link to Protein Sequence:NP_001371862.1Re-query CCDS DB by Nucleotide ID:NM_001384933Re-query CCDS DB by Protein ID:NP_001371862Link to BLAST:NP_001371862.1
Original member Current member NCBI NM_001384934.1 NP_001371863.1 Accepted alive Link to Nucleotide Sequence:NM_001384934.1Link to Protein Sequence:NP_001371863.1Re-query CCDS DB by Nucleotide ID:NM_001384934Re-query CCDS DB by Protein ID:NP_001371863Link to BLAST:NP_001371863.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001371861.1 116 A4D1F6-2 116 100% 0 0
NP_001371862.1 116 A4D1F6-2 116 100% 0 0
NP_001371863.1 116 A4D1F6-2 116 100% 0 0

Chromosomal Locations for CCDS 94143.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 92142810 92142829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92150534 92150695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92159005 92159173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (351 nt):
ATGACTCAACTTAAAGAACTTGATATCTCAAATAATGCAATCAGAGAGATTCCAAGAAATATAGGAGAAT
TGAGAAATTTGGTTAGTTTACATGCATACAATAATCAAATAAGTTATCTTCCACCATCTTTGCTATCTTT
AAATGATCTGCAGCAACTAAACCTGAGTGGAAATAATCTGACAGCTCTACCTAGTGCTATCTACAATATT
TTTTCACTGAAGGAGATAAATTTTGATGACAACCCTTTGCTGAGACCTCCAGTGGAAATCTGTAAAGGAA
AACAGTTGTATACTATTGCACGCTATCTACAGAGGGCAGATGAAAGAGATGGTCTGCAGCTTCACTCTTG
A

Translation (116 aa):
MTQLKELDISNNAIREIPRNIGELRNLVSLHAYNNQISYLPPSLLSLNDLQQLNLSGNNLTALPSAIYNI
FSLKEINFDDNPLLRPPVEICKGKQLYTIARYLQRADERDGLQLHS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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