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Report for CCDS53379.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53379.1 Public Homo sapiens 1 TTC24 24 110 108 CCDS HistoryNCBI Gene:164118Re-query CCDS DB by CCDS ID:53379.1Re-query CCDS DB by GeneID:164118See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53379.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368236.8 ENSP00000357219.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368236.8Link to Ensembl Protein Viewer:ENSP00000357219.3Re-query CCDS DB by Nucleotide ID:ENST00000368236Re-query CCDS DB by Protein ID:ENSP00000357219
Original member Current member NCBI NM_001105669.4 NP_001099139.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001105669.4Link to Protein Sequence:NP_001099139.2Re-query CCDS DB by Nucleotide ID:NM_001105669Re-query CCDS DB by Protein ID:NP_001099139Link to BLAST:NP_001099139.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001099139.2 582 A2A3L6 582 100% 0 0

Chromosomal Locations for CCDS 53379.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 156581365 156582070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156582231 156582434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156583042 156583170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156583338 156583450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156583797 156583895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156584877 156584974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156585125 156585231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156585713 156585826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156585949 156586045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156586469 156586550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1749 nt):
ATGTCTTCCCCCAACCCTGAGGATGTGCCCCGGAGGCCAGAACCTGAGCCCTCAAGCTCCAATAAGAAAA
AGAAGAAAAGAAAGTGGCTGCGGCAAGAAGCCAGCATCCAAGCCCTCACCAGGGCTGGCCATGGGGCCCT
TCAGGCTGGCCAGAACCATGAAGCCTTGAACAACTTCCAGAGGGCCTTCCTTCTGGCCTCCAAGGCCCCA
CAAACCAGGGATACCCCTGTGCTCCAGGCCTGCGCCTTCAACCTGGGGGCTGCCTATGTGGAGACTGGGG
ACCCAGCCAGAGGCCTTGAGCTACTCCTGCGAGCCCACCCTGAAGAGAAGGCACAGGGCAGGCGACACGG
CGACCAATGTTTCAATGTGGCTTTGGCCTACCATGCCCTCGGCGAGCTGCCTCAAGCTTTGGCCTGGTAC
CACAGGGCCCTGGGCCACTACCAGCCACAGGGTGACCAGGGAGAAGCCTGGGCAAAAATGGGAGCCTGCT
ACCAGGCTCTGGGACAGCCTGAGCTAGCAGCCCACTGCCTGCAGGAAGCAAGCCAGGCCTATGCTCAAGA
GAGACAGCTGCGGGCCGCAGCCCTGGCACTGGGGGCTGCGGCAGGATGTATGCTGAAGAGTGGGCGGCAT
CGGGTGGGGGAAGTTGTGCAGGTGCTGGAGAAAAGCCGGAGGCTTGCCGAGAGGAGCACTGAGAGGCGAC
TGCTGGGGCACCTCTATAACGATCTAGGCCTGGGCTACTCCCAGCTCCAGCTGTTCCCGCTGGCCGTGGA
GGCCTTCCTGCAGGCCCTGCCCCTGTGCTGGGTGCCAGGAGAGCAGGCCACAGTGCTAAGAAACCTCGGG
ATGGCCCACAATGCCCTCGGCAACTATCAGGAAGCTCGGGAGTTTCACCAGAAGGCTGCTGACCTACACG
GCTCTGTGGGGCAGCGGTGGGAGCAGGGCCGGAGCTTTGGCAGCCTGGCCTTTGCATTGAGCCAGCTGGG
GGACCACAAGGCTGCCAGAGACAACTACCTGCATGCCCTGCAGGCTGCCCGGGACTCTGGGGACATGAAG
GGACAGTGGCAGGCCTGTGAGGGTCTGGGGGCTGCTGCAGCCAGGCTGGGGCAGTATGACCAGGCCTTGA
AGTACTATAAGGAAGCACTGGCCCAGTGTCAGAAGGAGCCAGATTCTGTGCGAGAACGGCTGGTGGCCAA
GCTGGCAGACACCGTGAGGACGCGCTTGGCCCAGGTGGGGCTGGTCCAGACTCACACCCTGACTTCGGCT
CCGGGAAGACTCCAGGCTCCAGGTGGGGCCAGCCAGGCGGAGGGGACCCCAGCAAAGGCAGGAAGCAGCA
CAGCAGGTGTCCAGCACAGATCTTCCAGTGGGTGGGAAGATGAAGAGTTTGAGGAGGGCCACCAGAAGAA
AAAAGAGGAGAGGTCGGCAAACGTTCCGGTGAGGGCTGGGCCGGGAAGACCAGAGCTGTGTTTCCTTCCA
GGCACAGTGAATCATTCGCACCATCTAGCTTCTAGTTGCCCCACGTTTACCAAGCACACGCCCTGCAGAG
GGACAGTCCTCGGCAAAGCCTCCATCTATAGTCCAGGACCCAGGGCCCATCTTCCATTTGTAGGTCCAGG
CCCTCCCAGAGCGGAGTACCCTAGCATCTTGGTACCCAATGGCCCTCAAGCCAATAGGTCATCCAGGTGG
CCCAGGGAAAGCCTCAGCAGGAGCCGCCAGAGGAGACCCATGGAGTCGGGCATCTGCACTATTGTGTGA

Translation (582 aa):
MSSPNPEDVPRRPEPEPSSSNKKKKKRKWLRQEASIQALTRAGHGALQAGQNHEALNNFQRAFLLASKAP
QTRDTPVLQACAFNLGAAYVETGDPARGLELLLRAHPEEKAQGRRHGDQCFNVALAYHALGELPQALAWY
HRALGHYQPQGDQGEAWAKMGACYQALGQPELAAHCLQEASQAYAQERQLRAAALALGAAAGCMLKSGRH
RVGEVVQVLEKSRRLAERSTERRLLGHLYNDLGLGYSQLQLFPLAVEAFLQALPLCWVPGEQATVLRNLG
MAHNALGNYQEAREFHQKAADLHGSVGQRWEQGRSFGSLAFALSQLGDHKAARDNYLHALQAARDSGDMK
GQWQACEGLGAAAARLGQYDQALKYYKEALAQCQKEPDSVRERLVAKLADTVRTRLAQVGLVQTHTLTSA
PGRLQAPGGASQAEGTPAKAGSSTAGVQHRSSSGWEDEEFEEGHQKKKEERSANVPVRAGPGRPELCFLP
GTVNHSHHLASSCPTFTKHTPCRGTVLGKASIYSPGPRAHLPFVGPGPPRAEYPSILVPNGPQANRSSRW
PRESLSRSRQRRPMESGICTIV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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