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Report for CCDS42557.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42557.1 Public Homo sapiens 19 ZNF829 24 110 108 CCDS HistoryNCBI Gene:374899Re-query CCDS DB by CCDS ID:42557.1Re-query CCDS DB by GeneID:374899See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42557.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000391711.8 ENSP00000429266.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000391711.8Link to Ensembl Protein Viewer:ENSP00000429266.1Re-query CCDS DB by Nucleotide ID:ENST00000391711Re-query CCDS DB by Protein ID:ENSP00000429266
Original member Current member NCBI NM_001037232.4 NP_001032309.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001037232.4Link to Protein Sequence:NP_001032309.2Re-query CCDS DB by Nucleotide ID:NM_001037232Re-query CCDS DB by Protein ID:NP_001032309Link to BLAST:NP_001032309.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001032309.2 432 Q3KNS6-1 432 100% 0 0

Chromosomal Locations for CCDS 42557.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 36891492 36892471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36907929 36908024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36908333 36908459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36914965 36915022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36915130 36915167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1299 nt):
ATGCCCCATTCTCCTCTGATCTCCATTCCTCATGTGTGGTGTCACCCAGAAGAGGAGGAAAGAATGCATG
ATGAACTTCTACAAGCAGTATCCAAGGGGCCGGTGATGTTCAGGGATGTTTCCATAGACTTCTCTCAAGA
GGAATGGGAATGCCTGGACGCTGATCAGATGAATTTATACAAAGAAGTGATGTTGGAGAATTTCAGCAAC
CTGGTTTCAGTGGGACTTTCCAATTCTAAGCCAGCTGTGATCTCCTTATTGGAACAAGGAAAAGAGCCCT
GGATGGTTGATAGAGAGCTGACTAGAGGCCTGTGTTCAGATCTGGAATCAATGTGTGAGACCAAAATATT
ATCTCTAAAGAAGAGACATTTCAGTCAAGTAATAATTACCCGTGAAGACATGTCTACTTTTATTCAGCCC
ACATTTCTTATTCCACCTCAAAAAACTATGAGTGAAGAGAAACCATGGGAATGTAAGATATGTGGAAAGA
CCTTTAATCAAAACTCACAATTTATCCAACATCAGAGAATTCATTTTGGTGAAAAACACTATGAATCTAA
GGAGTATGGGAAGTCCTTTAGTCGTGGCTCACTCGTTACTCGACATCAGAGGATTCACACTGGTAAAAAA
CCCTATGAATGTAAGGAATGTGGCAAGGCTTTTAGTTGTAGTTCATATTTTTCTCAACATCAGAGGATTC
ACACTGGTGAGAAACCCTATGAATGTAAGGAATGTGGAAAAGCCTTTAAGTATTGCTCAAACCTTAATGA
TCATCAGAGAATTCACACTGGTGAGAAACCCTATGAATGTAAAGTATGTGGAAAAGCCTTTACTAAAAGT
TCACAACTTTTTCTACATCTGAGAATTCATACTGGTGAGAAACCTTATGAATGTAAAGAATGTGGGAAAG
CCTTTACTCAACACTCAAGGCTTATTCAGCATCAGAGAATGCATACTGGTGAGAAACCTTATGAATGTAA
GCAGTGTGGGAAGGCCTTTAATAGTGCCTCAACACTTACTAACCATCACAGAATTCATGCTGGTGAGAAG
CTCTATGAATGTGAAGAATGTAGAAAGGCCTTTATTCAGAGCTCAGAACTTATTCAACATCAGAGAATCC
ATACAGATGAAAAACCATATGAATGTAATGAATGTGGGAAGGCCTTTAATAAAGGCTCAAATCTTACTCG
ACATCAGAGAATTCACACTGGTGAGAAACCCTATGACTGTAAGGAATGTGGAAAGGCTTTTGGTAGTCGC
TCTGACCTCATTCGCCATGAGGGAATTCATACTGGTTGA

Translation (432 aa):
MPHSPLISIPHVWCHPEEEERMHDELLQAVSKGPVMFRDVSIDFSQEEWECLDADQMNLYKEVMLENFSN
LVSVGLSNSKPAVISLLEQGKEPWMVDRELTRGLCSDLESMCETKILSLKKRHFSQVIITREDMSTFIQP
TFLIPPQKTMSEEKPWECKICGKTFNQNSQFIQHQRIHFGEKHYESKEYGKSFSRGSLVTRHQRIHTGKK
PYECKECGKAFSCSSYFSQHQRIHTGEKPYECKECGKAFKYCSNLNDHQRIHTGEKPYECKVCGKAFTKS
SQLFLHLRIHTGEKPYECKECGKAFTQHSRLIQHQRMHTGEKPYECKQCGKAFNSASTLTNHHRIHAGEK
LYECEECRKAFIQSSELIQHQRIHTDEKPYECNECGKAFNKGSNLTRHQRIHTGEKPYDCKECGKAFGSR
SDLIRHEGIHTG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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