NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS51675.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51675.1 Public Mus musculus 5 Pilrb1 23 108 98 CCDS HistoryNCBI Gene:170741Re-query CCDS DB by CCDS ID:51675.1Re-query CCDS DB by GeneID:170741See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51675.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110978.6 ENSMUSP00000106606.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110978.6Link to Ensembl Protein Viewer:ENSMUSP00000106606.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110978Re-query CCDS DB by Protein ID:ENSMUSP00000106606
Original member Current member NCBI NM_133209.2 NP_573472.2 Accepted alive Link to Nucleotide Sequence:NM_133209.2Link to Protein Sequence:NP_573472.2Re-query CCDS DB by Nucleotide ID:NM_133209Re-query CCDS DB by Protein ID:NP_573472Link to BLAST:NP_573472.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_573472.2 224 Q2YFS2 224 100% 0 0

Chromosomal Locations for CCDS 51675.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 137853043 137853055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137854878 137855067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137857156 137857542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137857860 137857944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (675 nt):
ATGGCTTTGCTGATCTCGCTTCCTGGAGGGACTCCAGCCATGGCTCAGGTCCTGCTTCTGCTCTCATCAG
GCTGTCTGCATGCTGGAAATTCAGAAAGATACAACAGAAAAAATGGCTTTGGGGTCAACCAACCTGAACG
CTGCTCTGGAGTCCAGGGTGGCTCCATCGACATCCCCTTCTCCTTCTATTTCCCCTGGAAGTTGGCCAAG
GATCCACAGATGAGCATAGCCTGGAAATGGAAGGATTTCCATGGGGAAGTCATCTACAACTCCTCCCTGC
CTTTCATACATGAGCACTTCAAGGGCCGGCTCATCCTGAACTGGACACAGGGTCAGACATCTGGAGTCCT
CAGAATCCTGAACTTGAAGGAGTCTGACCAAGCCCAGTACTTTAGTCGAGTTAATCTGCAGTCGACAGAA
GGCATGAAGTTGTGGCAGTCAATTCCTGGAACCCAACTCAACGTGACCCAAGCACTCAACACCACCATGA
GGAGCCCCTTCATCGTCACCTCTGAATTCACCACAGCTGGCCTGGAGCACACAAGCGACCAGAGGAATCC
TTCACTGATGAACCTGGGAGCCATGGTCACGATGCTCCTGGCTAAAGTTTTGGTCATAGTCCTAGTCTAT
GGATGGATGATCTTCCTGAGGTGGAAGCAAAGGCCAGCACACTAA

Translation (224 aa):
MALLISLPGGTPAMAQVLLLLSSGCLHAGNSERYNRKNGFGVNQPERCSGVQGGSIDIPFSFYFPWKLAK
DPQMSIAWKWKDFHGEVIYNSSLPFIHEHFKGRLILNWTQGQTSGVLRILNLKESDQAQYFSRVNLQSTE
GMKLWQSIPGTQLNVTQALNTTMRSPFIVTSEFTTAGLEHTSDQRNPSLMNLGAMVTMLLAKVLVIVLVY
GWMIFLRWKQRPAH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH