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Report for CCDS17327.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17327.1 Public Mus musculus 3 Hspa4l 23 108 98 CCDS HistoryNCBI Gene:18415Re-query CCDS DB by CCDS ID:17327.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17327.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000204702.2 ENSMUSP00000145468.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000204702.2Link to Ensembl Protein Viewer:ENSMUSP00000145468.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000204702Re-query CCDS DB by Protein ID:ENSMUSP00000145468
Original member NCBI NM_011020.3 NP_035150.3 Updated not alive Link to Nucleotide Sequence:NM_011020.3Link to Protein Sequence:NP_035150.3Re-query CCDS DB by Nucleotide ID:NM_011020Re-query CCDS DB by Protein ID:NP_035150
Current member NCBI NM_011020.4 NP_035150.3 Accepted alive Link to Nucleotide Sequence:NM_011020.4Link to Protein Sequence:NP_035150.3Re-query CCDS DB by Nucleotide ID:NM_011020Re-query CCDS DB by Protein ID:NP_035150Link to BLAST:NP_035150.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035150.3 838 P48722-1 838 100% 0 0

Chromosomal Locations for CCDS 17327.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 40745678 40745784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40750675 40750732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40753150 40753290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40757001 40757123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40760364 40760463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40760782 40760915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40766812 40767056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40767203 40767279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40767970 40768121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40768752 40768858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40770511 40770644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40772547 40772743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40779335 40779433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40781560 40781697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40784229 40784354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40784620 40784727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40785279 40785398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40786724 40786885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40789201 40789389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2517 nt):
ATGTCGGTGGTGGGCATTGACCTCGGCTTCCTCAACTGCTACATCGCTGTAGCGAGGAGCGGCGGCATCG
AGACCATCGCCAACGAGTACAGCGACAGGTGCACGCCGGCCTGTATATCTTTGGGATCCAGAACTCGAGC
CATTGGAAATGCAGCTAAGAGCCAGATAGTCACAAATGTAAGAAATACAATTCATGGCTTCAAAAAGCTT
CATGGGCGATCATTTGATGACCCCATTGTGCAAACGGAGAGGATCAGGCTTCCGTACGAGCTGCAGAAGA
TGCCTAATGGAAGTACAGGTGTTAAGGTGCGGTACCTGGAAGAAGAGCGGCCCTTTGCAATTGAGCAAGT
CACTGGGATGTTGCTGGCTAAGCTTAAAGAGACCTCAGAAAATGCTCTGAAGAAGCCAGTGGCTGACTGT
GTGATCTCGATCCCGAGCTTTTTCACCGACGCAGAGAGAAGATCCGTGATGGCCGCAGCCCAGGTTGCAG
GCCTAAACTGTCTGAGGCTGATGAATGAAACCACTGCAGTTGCACTGGCATATGGAATTTATAAGCAGGA
TCTTCCCTCATTAGATGAGAAACCAAGGAATGTTGTGTTTATCGACATGGGACATTCTGCCTACCAGGTC
TCTGTTTGTGCTTTTAACAAAGGAAAACTGAAAGTGTTGGCTACTACCTTTGACCCATATTTGGGTGGCA
GGAACTTTGATGAGGCTTTAGTAGACTACTTCTGCGATGAATTCAAGACCAAATATAAGATAAATGTCAA
AGAGAACTCGCGGGCCTTGTTGCGGCTGTATCAGGAGTGTGAAAAACTAAAGAAGCTGATGAGTGCAAAC
GCGTCAGACCTTCCCCTGAACATCGAGTGTTTCATGAATGACCTTGATGTTTCTAGTAAGATGAACAGGG
CTCAATTTGAGCAGTTGTGTGCTTCCCTCTTAGCCAGGGTTGAACCACCTTTAAAATCAGTAATGGATCA
AGCTAACTTACAACGTGAAGACATAAACAGCATAGAGATTGTGGGAGGGGCCACACGGATTCCTGCAGTC
AAGGAGCAGGTGACTAGGTTCTTTCTGAAAGACATCAGTACCACCCTGAATGCTGATGAAGCTGTCGCCC
GAGGATGTGCGTTGCAGTGTGCGATTCTCTCACCAGCATTTAAAGTACGTGAATTTTCCATAACTGACCT
TGTTCCTTACTCAGTCACATTAAGGTGGAAGACTTCTTTTGAAGAAGGGACTGGGGAATGTGAAGTCTTC
TCTAAGAACCACCCGGCCCCATTCTCAAAGGTCATAACTTTCCACAAGAAGGAACCATTTGAACTAGAAG
CATTTTATACTAATTTGCATGAAGTGCCTTATCCTGATCCAAGAATTGGAAACTTCACTATTCAGAATGT
TTTCCCACAGTCTGATGGTGACAGTTCTAAAGTAAAAGTTAAAGTTCGTATTAATATCCATGGAATCTTC
AGTGTGGCCAGTGCGTCAGTAATTGAGAAGCAGAATCTGGAAGGTGATCATAACGATGCCGCTATGGAGA
CGGAAGCTCCTAAGAGTGAAGGCAAAGAGGATGTGGACAAAATGCAGGTTGACCAAGAAGAAGGAGGTCA
TCAGAAATGTCATGCTGAGCACACCCCAGAAGAGGAGATTGACCACACCGGGGCCAAAGCAAAGGCACCT
CCTTCAGATAAGCAAGATCGCATAAATCAAACTATTAAAAAAGGGAAAATCAAGAGTATTGATCTACCTA
TCCAGAGTAGCCTCTACAGACAGCTGACTCAAGACCTTCTCAATAGTTACATTGAAAATGAGGGGAAGAT
GATAATGCAGGATAAATTAGAGAAAGAAAGAAATGATGCTAAAAATGCTGTTGAAGAATACGTCTATGAT
TTCAGAGACAAATTGGGCACTGTCTACGAAAAGTTCATCACTCCAGAAGACATGAATAAGCTGTCTGCAA
TGTTAGAAGACACAGAAAATTGGCTGTATGAAGAAGGAGAAGACCAGCCTAAACAAGTTTATGTGGATAG
GCTGCAGGAATTAAAGAAATATGGCCAGCCCATTCAAATGAAGTACGTGGAGCATGAAGAGAGACCAAAA
GCTTTAAATGACTTGGGGAAAAAGATTCAGCTTGTCCTGAAAGTGATAGAAGCACACAGAAACAAGGATG
AAAGATATGATCATCTGGATCCTGCTGAAATGGAAAGAGTTGAAAAGTACATCAGTGACTCCATGAACTG
GCTAAACAGTAAGATGAATGCACAGAATAAATTAAGTCTCACTCAAGATCCCGTGGTAAAAGTGTCAGAA
ATAGTTACAAAGTCAAAGGAACTGGATAATTTCTGTAACCCCATCGTTTATAAGCCCAAACCAAAAGTAG
AAGCTCCTGAAGACAAAGCAAAAACTGGTAGTGAGCACAATGGACCAATGGACGGACAGAGTGGTTCAGA
GACCAGCCCAGATCCACCCAAAGGAAGCTCACAGCACACCGACTCCGGAGAGATGGAAGTGGACTAA

Translation (838 aa):
MSVVGIDLGFLNCYIAVARSGGIETIANEYSDRCTPACISLGSRTRAIGNAAKSQIVTNVRNTIHGFKKL
HGRSFDDPIVQTERIRLPYELQKMPNGSTGVKVRYLEEERPFAIEQVTGMLLAKLKETSENALKKPVADC
VISIPSFFTDAERRSVMAAAQVAGLNCLRLMNETTAVALAYGIYKQDLPSLDEKPRNVVFIDMGHSAYQV
SVCAFNKGKLKVLATTFDPYLGGRNFDEALVDYFCDEFKTKYKINVKENSRALLRLYQECEKLKKLMSAN
ASDLPLNIECFMNDLDVSSKMNRAQFEQLCASLLARVEPPLKSVMDQANLQREDINSIEIVGGATRIPAV
KEQVTRFFLKDISTTLNADEAVARGCALQCAILSPAFKVREFSITDLVPYSVTLRWKTSFEEGTGECEVF
SKNHPAPFSKVITFHKKEPFELEAFYTNLHEVPYPDPRIGNFTIQNVFPQSDGDSSKVKVKVRINIHGIF
SVASASVIEKQNLEGDHNDAAMETEAPKSEGKEDVDKMQVDQEEGGHQKCHAEHTPEEEIDHTGAKAKAP
PSDKQDRINQTIKKGKIKSIDLPIQSSLYRQLTQDLLNSYIENEGKMIMQDKLEKERNDAKNAVEEYVYD
FRDKLGTVYEKFITPEDMNKLSAMLEDTENWLYEEGEDQPKQVYVDRLQELKKYGQPIQMKYVEHEERPK
ALNDLGKKIQLVLKVIEAHRNKDERYDHLDPAEMERVEKYISDSMNWLNSKMNAQNKLSLTQDPVVKVSE
IVTKSKELDNFCNPIVYKPKPKVEAPEDKAKTGSEHNGPMDGQSGSETSPDPPKGSSQHTDSGEMEVD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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